<?xml version='1.0' encoding='UTF-8'?> <orthoXML xmlns="http://orthoXML.org/2011/" origin="OMA" originVersion="Jun 2024" version="0.5"> <species name="Campylobacter fetus subsp. fetus (strain 82-40)" NCBITaxId="-815033711" taxonId="2229"> <database name="Campylobacter fetus subsp. fetus 82-40, complete genome." version="02-DEC-2006 (Rel. 90, Last updated, Version 2)"> <genes> <gene id="1879932" protId="CAMFF00469"/> </genes> </database> </species> <species name="Kitasatospora setae (strain ATCC 33774 / DSM 43861 / JCM 3304 / KCC A-0304 / NBRC 14216 / KM-6054)" NCBITaxId="-1601470521" taxonId="2646"> <database name="Kitasatospora setae KM-6054 DNA, complete genome." version="05-JAN-2012 (Rel. 111, Last updated, Version 2)"> <genes> <gene id="1146324" protId="KITSK04065"/> </genes> </database> </species> <species name="Lactobacillus delbrueckii subsp. bulgaricus (strain 2038)" NCBITaxId="-1108034783" taxonId="3167"> <database name="Lactobacillus delbrueckii subsp. bulgaricus 2038, complete genome." version="15-MAY-2014 (Rel. 120, Last updated, Version 4)"> <genes> <gene id="2911761" protId="LACD201261"/> </genes> </database> </species> <species name="Finegoldia magna (strain ATCC 29328 / DSM 20472 / WAL 2508)" NCBITaxId="-704911769" taxonId="2395"> <database name="Finegoldia magna (strain ATCC 29328) chromosome, complete sequence." version="01-JUL-2008 (Rel. 93, Last updated, Version 3)"> <genes> <gene id="3500464" protId="FINM201302"/> </genes> </database> </species> <species name="Fibrobacter succinogenes (strain ATCC 19169 / S85)" NCBITaxId="-1077287074" taxonId="1640"> <database name="Fibrobacter succinogenes (strain ATCC 19169 / S85) chromosome, complete sequence." version="22-DEC-2009 (Rel. 115, Last updated, Version 1)"> <genes> <gene id="2590252" protId="FIBSS01703"/> </genes> </database> </species> <species name="Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50)" NCBITaxId="-11031136" taxonId="2548"> <database name="Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / VPI-5482 / E50) chromosome, complete sequence." version="01-SEP-2009 (Rel. 110, Last updated, Version 110)"> <genes> <gene id="1490294" protId="BACTN03453"/> </genes> </database> </species> <species name="candidate division WS2 bacterium BS5B28" NCBITaxId="-1663492784" taxonId="1578"> <database name="Candidatus Psychracetigena formicireducens from Genbank" version="Genbank; ASM1872517v1; GCA_018725175.1; 04-JUN-2021"> <genes> <gene id="3720038" protId="UC01200429"/> </genes> </database> </species> <species name="Clostridia bacterium zrk5" NCBITaxId="-1036592294" taxonId="1960"> <database name="Clostridia bacterium from Genbank" version="Genbank; ASM1688750v1; GCA_016887505.1; 14-FEB-2021"> <genes> <gene id="3617339" protId="U02CL01320"/> </genes> </database> </species> <species name="candidate division KSB1 bacterium BS750m-G25" NCBITaxId="-249140018" taxonId="1547"> <database name="candidate division KSB1 bacterium from Genbank" version="Genbank; ASM1678350v1; GCA_016783505.1; 01-FEB-2021"> <genes> <gene id="1462420" protId="UC05201028"/> </genes> </database> </species> <species name="Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10)" NCBITaxId="-1431796750" taxonId="2473"> <database name="Rhodothermus marinus DSM 4252, complete genome." version="16-DEC-2013 (Rel. 119, Last updated, Version 3)"> <genes> <gene id="1795330" protId="RHOM402777"/> </genes> </database> </species> <species name="Arcobacter nitrofigilis (strain ATCC 33309 / DSM 7299 / CCUG 15893 / LMG 7604 / NCTC 12251 / CI)" NCBITaxId="-1072979513" taxonId="2216"> <database name="Arcobacter nitrofigilis DSM 7299, complete genome." version="23-NOV-2011 (Rel. 110, Last updated, Version 4)"> <genes> <gene id="1877808" protId="ARCNC01470"/> </genes> </database> </species> <species name="Thermotoga naphthophila (strain ATCC BAA-489 / DSM 13996 / JCM 10882 / RKU-10)" NCBITaxId="-1153580709" taxonId="1854"> <database name="Thermotoga naphthophila (strain ATCC BAA-489 / DSM 13996 / JCM 10882 / RKU-10) chromosome, complete sequence." version="25-MAY-2010 (Rel. 121, Last updated, Version 4)"> <genes> <gene id="6809997" protId="THENR01727"/> </genes> </database> </species> <species name="Caldicellulosiruptor hydrothermalis (strain DSM 18901 / VKM B-2411 / 108)" NCBITaxId="-1303012013" taxonId="2369"> <database name="Caldicellulosiruptor hydrothermalis 108, complete genome." version="10-OCT-2011 (Rel. 110, Last updated, Version 4)"> <genes> <gene id="3508535" protId="CALH102450"/> <gene id="3508545" protId="CALH102460"/> </genes> </database> </species> <species name="Cupriavidus necator (strain ATCC 43291 / DSM 13513 / CCUG 52238 / LMG 8453 / N-1)" NCBITaxId="-516369777" taxonId="3790"> <database name="Cupriavidus necator N-1 chromosome 1, complete sequence." version="15-MAY-2014 (Rel. 120, Last updated, Version 6)"> <genes> <gene id="4999035" protId="CUPNN06699"/> </genes> </database> </species> <species name="Accumulibacter phosphatis (strain UW-1)" NCBITaxId="-745294054" taxonId="3717"> <database name="Candidatus Accumulibacter phosphatis clade IIA str. UW-1, complete genome." version="15-MAY-2014 (Rel. 120, Last updated, Version 4)"> <genes> <gene id="5218178" protId="ACCPU01988"/> </genes> </database> </species> <species name="Sphaerochaeta globosa (strain ATCC BAA-1886 / DSM 22777 / Buddy)" NCBITaxId="-2000372868" taxonId="2175"> <database name="Sphaerochaeta globosa str. Buddy, complete genome." version="08-MAY-2013 (Rel. 116, Last updated, Version 3)"> <genes> <gene id="6715914" protId="SPHGB00177"/> </genes> </database> </species> <species name="Cloacimonas acidaminovorans (strain Evry)" NCBITaxId="-458062894" taxonId="1560"> <database name="Candidatus Cloacamonas acidaminovorans str. Evry provisional genome sequence from WWE1 candidate division" version="27-FEB-2015 (Rel. 123, Last updated, Version 8)"> <genes> <gene id="2088020" protId="CLOAI01742"/> </genes> </database> </species> <species name="Selenomonas ruminantium subsp. lactilytica (strain NBRC 103574 / TAM6421)" NCBITaxId="-1793590870" taxonId="1754"> <database name="Selenomonas ruminantium subsp. lactilytica TAM6421 DNA, complete genome." version="29-MAR-2012 (Rel. 112, Last updated, Version 1)"> <genes> <gene id="3635673" protId="SELRL03094"/> </genes> </database> </species> <species name="Thermoanaerobacterium saccharolyticum (strain DSM 8691 / JW/SL-YS485)" NCBITaxId="-137990564" taxonId="2376"> <database name="Thermoanaerobacterium saccharolyticum JW/SL-YS485, complete genome." version="03-JUN-2012 (Rel. 113, Last updated, Version 1)"> <genes> <gene id="3532338" protId="THESW00572"/> </genes> </database> </species> <species name="Thermanaerosceptrum fracticalcis" NCBITaxId="-83648011" taxonId="1959"> <database name="Thermanaerosceptrum fracticalcis from Refseq" version="Refseq; ASM74602v2; GCA_000746025.2; 27-AUG-2020"> <genes> <gene id="3610672" protId="THEFR03099"/> </genes> </database> </species> <species name="Bacteroides helcogenes (strain ATCC 35417 / DSM 20613 / JCM 6297 / CCUG 15421 / P 36-108)" NCBITaxId="-1225437715" taxonId="2546"> <database name="Bacteroides helcogenes P 36-108, complete genome." version="10-OCT-2011 (Rel. 110, Last updated, Version 3)"> <genes> <gene id="1482060" protId="BACT601615"/> <gene id="1482151" protId="BACT601706"/> </genes> </database> </species> <species name="Streptomyces scabiei (strain 87.22)" NCBITaxId="-682070225" taxonId="2664"> <database name="Streptomyces scabies (strain 87.22) chromosome, complete sequence." version="22-DEC-2009 (Rel. 115, Last updated, Version 1)"> <genes> <gene id="1279057" protId="STRSW04938"/> </genes> </database> </species> <species name="Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / BCRC 12538 / CBS 129.76 / JCM 10878 / NBRC 16125 / NRRL B-16091 / INA 9442)" NCBITaxId="-1951903161" taxonId="2775"> <database name="Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 / NBRC 16125 / INA 9442) chromosome, complete sequence." version="08-MAR-2011 (Rel. 129, Last updated, Version 4)"> <genes> <gene id="682356" protId="MICAI01116"/> <gene id="681577" protId="MICAI00337"/> </genes> </database> </species> <species name="Planctomycetes bacterium Zod_Metabat.792" NCBITaxId="-380010460" taxonId="2035"> <database name="Planctomycetota bacterium from Genbank" version="Genbank; ASM1693548v1; GCA_016935485.1; 24-FEB-2021"> <genes> <gene id="4093904" protId="U14PL01290"/> </genes> </database> </species> <species name="Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / DSM 15643 / BCRC 10681 / CIP 101130 / JCM 8532 / KCTC 2640 / LMG 13131 / VPI 4355)" NCBITaxId="-1979201983" taxonId="1722"> <database name="Fusobacterium nucleatum nucleatum (strain JCM 8532 / LMG 13131 / CIP 101130 / ATCC 25586) chromosome, complete sequence." version="01-SEP-2009 (Rel. 110, Last updated, Version 108)"> <genes> <gene id="3693471" protId="FUSNN00701"/> </genes> </database> </species> <species name="Caldicellulosiruptor owensensis (strain ATCC 700167 / DSM 13100 / OL)" NCBITaxId="-2010289916" taxonId="2372"> <database name="Caldicellulosiruptor owensensis (strain ATCC 700167 / DSM 13100 / OL) chromosome, complete sequence." version="07-JUN-2011 (Rel. 130, Last updated, Version 2)"> <genes> <gene id="3515286" protId="CALOW02036"/> </genes> </database> </species> <species name="Nocardiopsis alba (strain ATCC BAA-2165 / BE74)" NCBITaxId="-1200462494" taxonId="2626"> <database name="Nocardiopsis alba ATCC BAA-2165, complete genome." version="02-NOV-2012 (Rel. 114, Last updated, Version 2)"> <genes> <gene id="1338888" protId="NOCAA01766"/> </genes> </database> </species> <species name="Rhizobium leguminosarum bv. viciae (strain 3841)" NCBITaxId="-701444757" taxonId="3483"> <database name="Rhizobium leguminosarum bv. viciae chromosome complete genome, strain 3841" version="16-MAY-2006 (Rel. 87, Last updated, Version 2)"> <genes> <gene id="4386261" protId="RHIL306601"/> </genes> </database> </species> <species name="Geobacter metallireducens (strain ATCC 53774 / DSM 7210 / GS-15)" NCBITaxId="-2044499356" taxonId="2130"> <database name="Geobacter metallireducens GS-15, complete genome." version="30-JAN-2014 (Rel. 119, Last updated, Version 7)"> <genes> <gene id="2420090" protId="GEOMG02605"/> </genes> </database> </species> <species name="Catenulispora acidiphila (strain DSM 44928 / JCM 14897 / NBRC 102108 / NRRL B-24433 / ID139908)" NCBITaxId="-1562818836" taxonId="2643"> <database name="Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) chromosome, complete sequence." version="09-FEB-2010 (Rel. 117, Last updated, Version 5)"> <genes> <gene id="1122558" protId="CATAD01391"/> </genes> </database> </species> <species name="Xylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990 / XIL07)" NCBITaxId="-1025403286" taxonId="2698"> <database name="Xylanimonas cellulosilytica DSM 15894, complete genome." version="23-NOV-2009 (Rel. 102, Last updated, Version 1)"> <genes> <gene id="551168" protId="XYLCX02851"/> </genes> </database> </species> <species name="Treponema primitia (strain ATCC BAA-887 / DSM 12427 / ZAS-2)" NCBITaxId="-309139796" taxonId="2194"> <database name="Treponema primitia ZAS-2, complete genome." version="24-MAY-2011 (Rel. 108, Last updated, Version 1)"> <genes> <gene id="6728755" protId="TREPZ00595"/> </genes> </database> </species> <species name="Sediminispirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228)" NCBITaxId="-271626100" taxonId="2169"> <database name="Spirochaeta smaragdinae DSM 11293, complete genome." version="10-OCT-2011 (Rel. 110, Last updated, Version 3)"> <genes> <gene id="6709460" protId="SEDSS00699"/> </genes> </database> </species> <species name="Nocardia cyriacigeorgica (strain GUH-2)" NCBITaxId="-2072016151" taxonId="2786"> <database name="Nocardia cyriacigeorgica GUH-2 chromosome complete genome" version="12-APR-2012 (Rel. 112, Last updated, Version 2)"> <genes> <gene id="976326" protId="NOCCG03513"/> </genes> </database> </species> <species name="Phocaeicola salanitronis (strain DSM 18170 / JCM 13657 / BL78)" NCBITaxId="-28444671" taxonId="2537"> <database name="Bacteroides salanitronis DSM 18170, complete genome." version="23-NOV-2011 (Rel. 110, Last updated, Version 3)"> <genes> <gene id="1491984" protId="PHOSB00372"/> </genes> </database> </species> <species name="Methanoculleus bourgensis (strain ATCC 43281 / DSM 3045 / OCM 15 / MS2)" NCBITaxId="-1153919341" taxonId="186"> <database name="Methanoculleus bourgensis MS2T complete genome" version="04-FEB-2014 (Rel. 119, Last updated, Version 5)"> <genes> <gene id="126119" protId="METBM02403"/> </genes> </database> </species> <species name="Chloroflexi bacterium MAG002" NCBITaxId="-1113070918" taxonId="1926"> <database name="Chloroflexi bacterium from Genbank" version="Genbank; ASM1547872v1; GCA_015478725.1; 15-NOV-2020"> <genes> <gene id="2074447" protId="U05CH01351"/> </genes> </database> </species> <species name="Wolbachia pipientis subsp. Culex pipiens (strain wPip)" NCBITaxId="-1537713763" taxonId="3387"> <database name="Wolbachia pipientis (subsp. Culex pipiens, strain wPip) chromosome, complete sequence." version="02-SEP-2008 (Rel. 95, Last updated, Version 1)"> <genes> <gene id="4692072" protId="WOLPP00220"/> </genes> </database> </species> <species name="Desulfitobacterium hafniense (strain DSM 10664 / DCB-2)" NCBITaxId="-263613146" taxonId="1982"> <database name="Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) chromosome, complete sequence." version="24-NOV-2009 (Rel. 114, Last updated, Version 7)"> <genes> <gene id="3552050" protId="DESHD04400"/> </genes> </database> </species> <species name="Lacinutrix sp. (strain 5H-3-7-4)" NCBITaxId="-690450784" taxonId="2574"> <database name="Lacinutrix sp. 5H-3-7-4, complete genome." version="14-OCT-2011 (Rel. 110, Last updated, Version 3)"> <genes> <gene id="1684333" protId="LACS502026"/> </genes> </database> </species> <species name="Planctomycetes bacterium Poly30" NCBITaxId="-910995644" taxonId="2040"> <database name="Planctomycetes bacterium Poly30 from Genbank" version="Genbank; ASM775147v1; GCA_007751475.1; 31-JUL-2019"> <genes> <gene id="4145025" protId="UC10800677"/> </genes> </database> </species> <species name="Petrotoga mobilis (strain DSM 10674 / SJ95)" NCBITaxId="-1269627468" taxonId="1839"> <database name="Petrotoga mobilis (strain DSM 10674 / SJ95) chromosome, complete sequence." version="18-MAR-2008 (Rel. 88, Last updated, Version 2)"> <genes> <gene id="6792588" protId="PETMO01293"/> </genes> </database> </species> <species name="Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / BCRC 11376 / JCM 18109 / NBRC 3775 / NCIMB 8073 / NRS 134)" NCBITaxId="-974398888" taxonId="2700"> <database name="Cellulomonas flavigena DSM 20109, complete genome." version="17-MAY-2011 (Rel. 108, Last updated, Version 2)"> <genes> <gene id="532714" protId="CELFN00308"/> <gene id="535766" protId="CELFN03360"/> </genes> </database> </species> <species name="Flexistipes sinusarabici (strain ATCC 49648 / DSM 4947 / MAS 10)" NCBITaxId="-959127438" taxonId="1680"> <database name="Flexistipes sinusarabici DSM 4947, complete genome." version="18-JUL-2013 (Rel. 117, Last updated, Version 5)"> <genes> <gene id="2316858" protId="FLESM01533"/> <gene id="2316228" protId="FLESM00903"/> </genes> </database> </species> <species name="Belliella baltica (strain DSM 15883 / CIP 108006 / LMG 21964 / BA134)" NCBITaxId="-1808803562" taxonId="2509"> <database name="Belliella baltica DSM 15883, complete genome." version="09-JAN-2015 (Rel. 123, Last updated, Version 3)"> <genes> <gene id="1573848" protId="BELBD01328"/> </genes> </database> </species> <species name="bacterium Zod_Metabat.886" NCBITaxId="-1552587538" taxonId="1663"> <database name="bacterium from Genbank" version="Genbank; ASM1693467v1; GCA_016934675.1; 24-FEB-2021"> <genes> <gene id="1865372" protId="UC02802905"/> </genes> </database> </species> <species name="Treponema succinifaciens (strain ATCC 33096 / DSM 2489 / 6091)" NCBITaxId="-1477853467" taxonId="2199"> <database name="Treponema succinifaciens DSM 2489, complete genome." version="12-OCT-2011 (Rel. 110, Last updated, Version 5)"> <genes> <gene id="6748649" protId="TRES601843"/> <gene id="6747593" protId="TRES600787"/> </genes> </database> </species> <species name="Deltaproteobacteria bacterium NC_groundwater_1649_Pr3_B-0.1um_64_26" NCBITaxId="-1753036691" taxonId="2001"> <database name="Deltaproteobacteria bacterium from Genbank" version="Genbank; ASM1621896v1; GCA_016218965.1; 21-DEC-2020"> <genes> <gene id="3938778" protId="U07DE02057"/> <gene id="3940679" protId="U07DE03958"/> </genes> </database> </species> <species name="Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / CCUG 4856 / JCM 11019 / NCTC 9343 / Onslow)" NCBITaxId="-1173015801" taxonId="2550"> <database name="Bacteroides fragilis NCTC 9343, complete genome" version="01-JUL-2011 (Rel. 109, Last updated, Version 6)"> <genes> <gene id="1473247" protId="BACFN01716"/> </genes> </database> </species> <species name="Sulfurihydrogenibium azorense (strain Az-Fu1 / DSM 15241 / OCM 825)" NCBITaxId="-1713375110" taxonId="1806"> <database name="Sulfurihydrogenibium azorense (strain Az-Fu1 / DSM 15241 / OCM 825) chromosome, complete sequence." version="13-OCT-2009 (Rel. 112, Last updated, Version 5)"> <genes> <gene id="1411293" protId="SULAA00001"/> </genes> </database> </species> <species name="Candidatus Omnitrophica bacterium BS750m-G34" NCBITaxId="-1883913637" taxonId="1548"> <database name="Candidatus Omnitrophica bacterium from Genbank" version="Genbank; ASM1678334v1; GCA_016783345.1; 01-FEB-2021"> <genes> <gene id="1464344" protId="UC05300733"/> </genes> </database> </species> <species name="Armatimonadetes bacterium NC_groundwater_316_Ag_B-0.1um_55_8" NCBITaxId="-261026574" taxonId="1684"> <database name="Armatimonadetes bacterium from Genbank" version="Genbank; ASM1618386v1; GCA_016183865.1; 21-DEC-2020"> <genes> <gene id="2568750" protId="U05AM01949"/> </genes> </database> </species> <species name="Bifidobacterium longum subsp. infantis (strain 157F)" NCBITaxId="-800000338" taxonId="2738"> <database name="Bifidobacterium longum subsp. infantis 157F DNA, complete genome." version="31-JAN-2011 (Rel. 107, Last updated, Version 1)"> <genes> <gene id="515542" protId="BIFL101879"/> </genes> </database> </species> <species name="Syntrophus aciditrophicus (strain SB)" NCBITaxId="-1715634453" taxonId="2102"> <database name="Syntrophus aciditrophicus SB, complete genome." version="30-JAN-2006 (Rel. 86, Last updated, Version 2)"> <genes> <gene id="2474542" protId="SYNAS01251"/> </genes> </database> </species> <species name="bacterium ADurb.Bin236" NCBITaxId="-1274900541" taxonId="1624"> <database name="bacterium ADurb.Bin236 from Genbank" version="Genbank; ASM206988v1; GCA_002069885.1; 22-MAR-2017"> <genes> <gene id="6833741" protId="UC15702398"/> </genes> </database> </species> <species name="Nitrospinae bacterium NC_groundwater_948_Pr1_S-0.2um_39_25" NCBITaxId="-2093639501" taxonId="1740"> <database name="Nitrospinae bacterium from Genbank" version="Genbank; ASM1619432v1; GCA_016194325.1; 21-DEC-2020"> <genes> <gene id="3993906" protId="U02NI00872"/> </genes> </database> </species> <species name="Roseburia hominis (strain DSM 16839 / JCM 17582 / NCIMB 14029 / A2-183)" NCBITaxId="-315051426" taxonId="2430"> <database name="Roseburia hominis A2-183, complete genome." version="23-JUN-2016 (Rel. 129, Last updated, Version 8)"> <genes> <gene id="3452752" protId="ROSHA01695"/> </genes> </database> </species> <species name="Nitrospirae bacterium NC_groundwater_1760_Pr3_B-0.1um_42_52" NCBITaxId="-1524826219" taxonId="1758"> <database name="Nitrospirae bacterium from Genbank" version="Genbank; ASM1621221v1; GCA_016212215.1; 21-DEC-2020"> <genes> <gene id="3999748" protId="U05NT00409"/> <gene id="3999787" protId="U05NT00448"/> </genes> </database> </species> <species name="Streptomyces lincolnensis" NCBITaxId="-479958514" taxonId="2657"> <database name="Streptomyces lincolnensis from Ensembl Bacteria 46" version="Ensembl Bacteria 46; ASM168535v1"> <genes> <gene id="1224277" protId="STRLN05444"/> <gene id="1223198" protId="STRLN04365"/> </genes> </database> </species> <species name="Agathobacter rectalis (strain ATCC 33656 / DSM 3377 / JCM 17463 / KCTC 5835 / VPI 0990)" NCBITaxId="-1140930106" taxonId="2423"> <database name="Eubacterium rectale (strain ATCC 33656 / VPI 0990) chromosome, complete sequence." version="25-MAY-2010 (Rel. 121, Last updated, Version 12)"> <genes> <gene id="3429573" protId="AGARV02008"/> <gene id="3427897" protId="AGARV00332"/> <gene id="3427865" protId="AGARV00300"/> </genes> </database> </species> <species name="Caldicellulosiruptor kronotskyensis (strain DSM 18902 / VKM B-2412 / 2002)" NCBITaxId="-1266731129" taxonId="2370"> <database name="Caldicellulosiruptor kronotskyensis 2002, complete genome." version="10-OCT-2011 (Rel. 110, Last updated, Version 3)"> <genes> <gene id="3510996" protId="CALK202390"/> <gene id="3511014" protId="CALK202408"/> </genes> </database> </species> <species name="Lactobacillus delbrueckii subsp. bulgaricus (strain ND02)" NCBITaxId="-1602799542" taxonId="3170"> <database name="Lactobacillus delbrueckii (subsp. bulgaricus, strain ND02) chromosome, complete sequence." version="08-MAR-2011 (Rel. 129, Last updated, Version 1)"> <genes> <gene id="2917344" protId="LACDN01390"/> </genes> </database> </species> <species name="Nitrospirae bacterium NC_groundwater_891_Pr1_S2p5_65_34" NCBITaxId="-1009233869" taxonId="1761"> <database name="Nitrospirae bacterium from Genbank" version="Genbank; ASM1619546v1; GCA_016195465.1; 21-DEC-2020"> <genes> <gene id="4011337" protId="U02NT01857"/> </genes> </database> </species> <species name="Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399)" NCBITaxId="-364904970" taxonId="2630"> <database name="Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) chromosome, complete sequence." version="08-MAR-2011 (Rel. 129, Last updated, Version 10)"> <genes> <gene id="1088954" protId="KRIFD03608"/> </genes> </database> </species> <species name="Tannerella forsythia (strain ATCC 43037 / JCM 10827 / CCUG 21028 A / KCTC 5666 / FDC 338)" NCBITaxId="-2125673187" taxonId="2527"> <database name="Tannerella forsythia ATCC 43037, complete genome." version="16-DEC-2011 (Rel. 111, Last updated, Version 1)"> <genes> <gene id="1534577" protId="TANFA00486"/> </genes> </database> </species> <species name="Nocardia farcinica (strain IFM 10152)" NCBITaxId="-1589269342" taxonId="2787"> <database name="Nocardia farcinica (strain IFM 10152) chromosome, complete sequence." version="02-MAR-2010 (Rel. 118, Last updated, Version 99)"> <genes> <gene id="983100" protId="NOCFA04800"/> </genes> </database> </species> <species name="Bifidobacterium longum subsp. longum (strain BBMN68)" NCBITaxId="-1251706211" taxonId="2740"> <database name="Bifidobacterium longum subsp. longum BBMN68, complete genome." version="19-JAN-2011 (Rel. 107, Last updated, Version 3)"> <genes> <gene id="518961" protId="BIFLM01420"/> </genes> </database> </species> <species name="Candidatus Raymondbacteria bacterium RIFOXYA2_FULL_49_16 none" NCBITaxId="-1577753313" taxonId="1641"> <database name="Candidatus Raymondbacteria bacterium RIFOXYA2_FULL_49_16 from Genbank" version="Genbank; ASM178920v1; GCA_001789205.1; 19-OCT-2016"> <genes> <gene id="2592657" protId="UC16601024"/> <gene id="2592913" protId="UC16601280"/> </genes> </database> </species> <species name="Clostridium sp. (strain SY8519)" NCBITaxId="-1263461042" taxonId="2426"> <database name="Clostridium sp. SY8519 DNA, complete genome." version="22-SEP-2011 (Rel. 110, Last updated, Version 2)"> <genes> <gene id="3440178" protId="CLOSS02501"/> </genes> </database> </species> <species name="Kitasatospora griseola" NCBITaxId="-1149796894" taxonId="2644"> <database name="Kitasatospora griseola from Ensembl Bacteria 41" version="Ensembl Bacteria 41; ASM83663v1"> <genes> <gene id="1133297" protId="KITGR03222"/> </genes> </database> </species> <species name="Sphaerochaeta pleomorpha (strain ATCC BAA-1885 / DSM 22778 / Grapes)" NCBITaxId="-1791016131" taxonId="2176"> <database name="Spirochaeta sp. Grapes, complete genome." version="06-DEC-2011 (Rel. 111, Last updated, Version 1)"> <genes> <gene id="6720354" protId="SPHPG01610"/> </genes> </database> </species> <species name="Lactobacillus crispatus (strain ST1)" NCBITaxId="-785061589" taxonId="3157"> <database name="Lactobacillus crispatus (strain ST1) chromosome, complete sequence." version="08-MAR-2011 (Rel. 129, Last updated, Version 6)"> <genes> <gene id="2908632" protId="LACCS00133"/> </genes> </database> </species> <species name="Bacteroides fragilis (strain YCH46)" NCBITaxId="-661754158" taxonId="2551"> <database name="Bacteroides fragilis (strain YCH46) chromosome, complete sequence." version="02-MAR-2010 (Rel. 118, Last updated, Version 100)"> <genes> <gene id="1477543" protId="BACFR01707"/> <gene id="1478646" protId="BACFR02810"/> </genes> </database> </species> <species name="Desulfohalobium retbaense (strain ATCC 49708 / DSM 5692 / JCM 16813 / HR100)" NCBITaxId="-362799664" taxonId="1818"> <database name="Desulfohalobium retbaense (strain DSM 5692) chromosome, complete sequence." version="02-NOV-2010 (Rel. 126, Last updated, Version 13)"> <genes> <gene id="2504639" protId="DESRD02319"/> </genes> </database> </species> <species name="Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1)" NCBITaxId="-125904839" taxonId="2488"> <database name="Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) chromosome, complete sequence." version="16-DEC-2008 (Rel. 100, Last updated, Version 4)"> <genes> <gene id="1768248" protId="PELPB02338"/> </genes> </database> </species> <species name="Chloroflexi bacterium NC_groundwater_1535_Pr4_S-0.65um_62_11" NCBITaxId="-1909304357" taxonId="1923"> <database name="Chloroflexi bacterium from Genbank" version="Genbank; ASM1620834v1; GCA_016208345.1; 21-DEC-2020"> <genes> <gene id="2050972" protId="U06CH01920"/> </genes> </database> </species> <species name="Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901)" NCBITaxId="-621223501" taxonId="1962"> <database name="Carboxydothermus hydrogenoformans Z-2901, complete genome." version="03-FEB-2014 (Rel. 119, Last updated, Version 5)"> <genes> <gene id="3621356" protId="CARHZ00100"/> </genes> </database> </species> <species name="Firmicutes bacterium Ch29" NCBITaxId="-843998404" taxonId="2363"> <database name="Firmicutes bacterium from Genbank" version="Genbank; ASM1354060v1; GCA_013540605.1; 23-JUL-2020"> <genes> <gene id="3326457" protId="U04FI02985"/> </genes> </database> </species> <species name="Clostridium sp. (strain ATCC 29733 / VPI C48-50)" NCBITaxId="-324514695" taxonId="2407"> <database name="Clostridium sp. ATCC 29733 from Ensembl Bacteria 44" version="Ensembl Bacteria 44; ASM46660v1"> <genes> <gene id="3464538" protId="CLOS400032"/> </genes> </database> </species> <species name="Gardnerella vaginalis (strain ATCC 14019 / 317)" NCBITaxId="-1742316759" taxonId="2726"> <database name="Gardnerella vaginalis ATCC 14019, complete genome." version="01-SEP-2013 (Rel. 118, Last updated, Version 6)"> <genes> <gene id="523868" protId="GARV301332"/> </genes> </database> </species> <species name="Simkania negevensis (strain ATCC VR-1471 / Z)" NCBITaxId="-1556533146" taxonId="2054"> <database name="Simkania negevensis Z main chromosome, complete genome" version="27-FEB-2015 (Rel. 123, Last updated, Version 3)"> <genes> <gene id="2004755" protId="SIMNZ02307"/> <gene id="2002699" protId="SIMNZ00251"/> <gene id="2004740" protId="SIMNZ02292"/> <gene id="2002981" protId="SIMNZ00533"/> </genes> </database> </species> <species name="Desulfofundulus kuznetsovii (strain DSM 6115 / VKM B-1805 / 17)" NCBITaxId="-1318850919" taxonId="1971"> <database name="Desulfotomaculum kuznetsovii DSM 6115, complete genome." version="14-OCT-2011 (Rel. 110, Last updated, Version 2)"> <genes> <gene id="3596035" protId="DESK702724"/> </genes> </database> </species> <species name="Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365 / Lb-18)" NCBITaxId="-81901643" taxonId="3169"> <database name="Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, complete genome." version="04-NOV-2006 (Rel. 89, Last updated, Version 3)"> <genes> <gene id="2915450" protId="LACDB01175"/> </genes> </database> </species> <species name="Deltaproteobacteria bacterium EsbW_18-Q3-R4-48_MAXAC.279_cln" NCBITaxId="-1140965514" taxonId="1619"> <database name="Deltaproteobacteria bacterium from Genbank" version="Genbank; ASM1669944v1; GCA_016699445.1; 19-JAN-2021"> <genes> <gene id="6813098" protId="U12DE01280"/> <gene id="6813411" protId="U12DE01593"/> </genes> </database> </species> <species name="Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12)" NCBITaxId="-1536099721" taxonId="2721"> <database name="Bifidobacterium longum subsp. infantis ATCC 15697, complete genome." version="24-DEC-2008 (Rel. 98, Last updated, Version 1)"> <genes> <gene id="507138" protId="BIFLS00003"/> <gene id="507641" protId="BIFLS00506"/> <gene id="509879" protId="BIFLS02744"/> </genes> </database> </species> <species name="Candidatus Eisenbacteria bacterium Fred_18-Q3-R57-64_MAXAC.354" NCBITaxId="-1488642712" taxonId="1571"> <database name="Candidatus Eisenbacteria bacterium from Genbank" version="Genbank; ASM1671250v1; GCA_016712505.1; 29-JUN-2022"> <genes> <gene id="2555311" protId="UC05702270"/> </genes> </database> </species> <species name="Planctomycetes bacterium Aved_18-Q3-R54-62_MAXAC.457" NCBITaxId="-724070316" taxonId="2027"> <database name="Planctomycetota bacterium from Genbank" version="Genbank; ASM1670914v1; GCA_016709145.1; 29-JUN-2022"> <genes> <gene id="4055857" protId="U12PL03507"/> </genes> </database> </species> <species name="Streptomyces toyocaensis" NCBITaxId="-198105090" taxonId="2668"> <database name="Streptomyces toyocaensis from Ensembl Bacteria 41" version="Ensembl Bacteria 41; ASM72512v1"> <genes> <gene id="1307679" protId="STRTO05068"/> <gene id="1305041" protId="STRTO02430"/> <gene id="1308507" protId="STRTO05896"/> </genes> </database> </species> <species name="Frankia casuarinae (strain DSM 45818 / CECT 9043 / CcI3)" NCBITaxId="-1047051963" taxonId="2751"> <database name="Frankia sp. CcI3, complete genome." version="02-JAN-2014 (Rel. 119, Last updated, Version 11)"> <genes> <gene id="621514" protId="FRACC02544"/> </genes> </database> </species> <species name="Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T 6331)" NCBITaxId="-2006840310" taxonId="2373"> <database name="Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) chromosome, complete sequence." version="23-OCT-2007 (Rel. 82, Last updated, Version 2)"> <genes> <gene id="3515418" protId="CALS800036"/> <gene id="3515437" protId="CALS800055"/> </genes> </database> </species> <species name="Armatimonadetes bacterium Ch1" NCBITaxId="-201822911" taxonId="1780"> <database name="Armatimonadetes bacterium from Genbank" version="Genbank; ASM1331477v1; GCA_013314775.1; 09-JUN-2020"> <genes> <gene id="1447900" protId="U03AM02210"/> </genes> </database> </species> <species name="Emticicia oligotrophica (strain DSM 17448 / CIP 109782 / MTCC 6937 / GPTSA100-15)" NCBITaxId="-1774814459" taxonId="2516"> <database name="Emticicia oligotrophica DSM 17448, complete genome." version="18-JUL-2013 (Rel. 117, Last updated, Version 2)"> <genes> <gene id="1606533" protId="EMTOG04067"/> </genes> </database> </species> <species name="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 / Bd1)" NCBITaxId="-889061345" taxonId="2720"> <database name="Bifidobacterium dentium (strain Bd1) chromosome, complete sequence." version="25-MAY-2010 (Rel. 121, Last updated, Version 3)"> <genes> <gene id="507111" protId="BIFDB02095"/> </genes> </database> </species> <species name="Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057)" NCBITaxId="-565707437" taxonId="2651"> <database name="Streptomyces cattleya str. NRRL 8057 main chromosome, complete genome." version="27-FEB-2015 (Rel. 123, Last updated, Version 3)"> <genes> <gene id="1178299" protId="STREN05049"/> <gene id="1178505" protId="STREN05255"/> </genes> </database> </species> <species name="Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320)" NCBITaxId="-1449962728" taxonId="2368"> <database name="Caldicellulosiruptor bescii DSM 6725, complete genome." version="15-MAY-2014 (Rel. 120, Last updated, Version 6)"> <genes> <gene id="3505994" protId="CALBD02557"/> <gene id="3505967" protId="CALBD02530"/> </genes> </database> </species> <species name="Streptomyces collinus (strain DSM 40733 / Tue 365)" NCBITaxId="-393074400" taxonId="2653"> <database name="Streptomyces collinus Tu 365 from Ensembl Bacteria 41" version="Ensembl Bacteria 41; ASM44487v1"> <genes> <gene id="1194792" protId="STRC305267"/> </genes> </database> </species> <species name="Micromonospora sp. (strain L5)" NCBITaxId="-1705309898" taxonId="2776"> <database name="Micromonospora sp. (strain L5) chromosome, complete sequence." version="07-JUN-2011 (Rel. 130, Last updated, Version 1)"> <genes> <gene id="688789" protId="MICSL01346"/> <gene id="687758" protId="MICSL00315"/> </genes> </database> </species> <species name="Eggerthella lenta (strain ATCC 25559 / DSM 2243 / CCUG 17323 / JCM 9979 / KCTC 3265 / NCTC 11813 / VPI 0255 / 1899 B)" NCBITaxId="-829428497" taxonId="2616"> <database name="Eggerthella lenta DSM 2243, complete genome." version="16-DEC-2013 (Rel. 119, Last updated, Version 3)"> <genes> <gene id="1379269" protId="EGGLE02225"/> </genes> </database> </species> <species name="Caldicellulosiruptor obsidiansis (strain ATCC BAA-2073 / strain OB47)" NCBITaxId="-980378000" taxonId="2371"> <database name="Caldicellulosiruptor obsidiansis OB47, complete genome." version="10-OCT-2011 (Rel. 110, Last updated, Version 3)"> <genes> <gene id="3513190" protId="CALOO02124"/> </genes> </database> </species> <species name="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100)" NCBITaxId="-522357000" taxonId="2622"> <database name="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) chromosome, complete sequence." version="25-MAY-2010 (Rel. 121, Last updated, Version 4)"> <genes> <gene id="1350393" protId="STRRD02245"/> <gene id="1356590" protId="STRRD08442"/> <gene id="1349363" protId="STRRD01215"/> </genes> </database> </species> <species name="Frankia inefficax (strain DSM 45817 / CECT 9037 / EuI1c)" NCBITaxId="-1690590637" taxonId="2752"> <database name="Frankia sp. EuI1c, complete genome." version="07-NOV-2010 (Rel. 106, Last updated, Version 1)"> <genes> <gene id="628451" protId="FRAIE05045"/> </genes> </database> </species> <species name="Gardnerella vaginalis (strain HMP9231)" NCBITaxId="-1336742922" taxonId="2727"> <database name="Gardnerella vaginalis HMP9231, complete genome." version="16-DEC-2013 (Rel. 119, Last updated, Version 4)"> <genes> <gene id="524069" protId="GARVH00169"/> </genes> </database> </species> <species name="Bacteroides fragilis (strain 638R)" NCBITaxId="-1842265812" taxonId="2549"> <database name="Bacteroides fragilis 638R genome." version="16-NOV-2010 (Rel. 106, Last updated, Version 2)"> <genes> <gene id="1468287" protId="BACF601074"/> </genes> </database> </species> <species name="Desulfitobacterium dichloroeliminans (strain LMG P-21439 / DCA1)" NCBITaxId="-1286676296" taxonId="1981"> <database name="Desulfitobacterium dichloroeliminans LMG P-21439, complete genome." version="18-JUL-2013 (Rel. 117, Last updated, Version 2)"> <genes> <gene id="3547360" protId="DESDL03004"/> </genes> </database> </species> <species name="Parachlamydia acanthamoebae (strain UV7)" NCBITaxId="-1848877544" taxonId="2056"> <database name="Parachlamydia acanthamoebae UV-7, complete genome" version="10-FEB-2012 (Rel. 111, Last updated, Version 3)"> <genes> <gene id="1999249" protId="PARAV01604"/> </genes> </database> </species> <species name="Thermosipho melanesiensis (strain DSM 12029 / CIP 104789 / BI429)" NCBITaxId="-1781475992" taxonId="1847"> <database name="Thermosipho melanesiensis (strain BI429 / DSM 12029) chromosome, complete sequence." version="05-FEB-2008 (Rel. 86, Last updated, Version 2)"> <genes> <gene id="6802428" protId="THEM401641"/> <gene id="6801857" protId="THEM401070"/> </genes> </database> </species> <species name="Alistipes finegoldii (strain DSM 17242 / JCM 16770 / CCUG 46020 / CIP 107999 / KCTC 15236 / AHN 2437)" NCBITaxId="-514335245" taxonId="2525"> <database name="Alistipes finegoldii DSM 17242, complete genome." version="18-JAN-2015 (Rel. 123, Last updated, Version 3)"> <genes> <gene id="1527745" protId="ALIFI00538"/> </genes> </database> </species> <species name="Pontiella desulfatans" NCBITaxId="-199935549" taxonId="1765"> <database name="Pontiella desulfatans from Refseq" version="Refseq; Pontiella desulfatans F1 draft genome; GCA_900890425.1; 23-AUG-2020"> <genes> <gene id="6845676" protId="PONDE03241"/> </genes> </database> </species> <species name="Lactobacillus kefiranofaciens (strain ZW3)" NCBITaxId="-14515559" taxonId="3160"> <database name="Lactobacillus kefiranofaciens ZW3, complete genome." version="15-MAY-2014 (Rel. 120, Last updated, Version 6)"> <genes> <gene id="2925914" protId="LACKZ01153"/> <gene id="2926089" protId="LACKZ01328"/> <gene id="2924927" protId="LACKZ00166"/> </genes> </database> </species> <species name="Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764)" NCBITaxId="-978085986" taxonId="2759"> <database name="Saccharothrix espanaensis DSM 44229 complete genome" version="02-OCT-2012 (Rel. 114, Last updated, Version 1)"> <genes> <gene id="1026936" protId="SACES02148"/> </genes> </database> </species> <species name="Bifidobacterium longum (strain NCC 2705)" NCBITaxId="-388552094" taxonId="2737"> <database name="Bifidobacterium longum (strain NCC 2705) chromosome, complete sequence." version="01-SEP-2009 (Rel. 110, Last updated, Version 110)"> <genes> <gene id="513193" protId="BIFLO01253"/> <gene id="513271" protId="BIFLO01331"/> </genes> </database> </species> <species name="Candidatus Tectomicrobia bacterium NC_groundwater_717_Ag_S-0.2um_59_8" NCBITaxId="-1977179532" taxonId="1586"> <database name="Candidatus Tectomicrobia bacterium from Genbank" version="Genbank; ASM1619306v1; GCA_016193065.1; 21-DEC-2020"> <genes> <gene id="3745981" protId="UC07402218"/> </genes> </database> </species> <species name="Thermotoga sp. (strain RQ2)" NCBITaxId="-1305839565" taxonId="1852"> <database name="Thermotoga sp. (strain RQ2) chromosome, complete sequence." version="01-JUL-2008 (Rel. 93, Last updated, Version 3)"> <genes> <gene id="6806302" protId="THESQ01786"/> </genes> </database> </species> <species name="Candidatus Schekmanbacteria bacterium NC_groundwater_415_Ag_B-0.1um_66_15" NCBITaxId="-390227655" taxonId="1662"> <database name="Candidatus Schekmanbacteria bacterium from Genbank" version="Genbank; ASM1618857v1; GCA_016188575.1; 21-DEC-2020"> <genes> <gene id="1857942" protId="UC07802299"/> <gene id="1859027" protId="UC07803384"/> </genes> </database> </species> <species name="Candidatus Riflebacteria bacterium nHGRbin4" NCBITaxId="-1618407966" taxonId="1608"> <database name="Candidatus Riflebacteria bacterium from Genbank" version="Genbank; ASM1523257v1; GCA_015232575.1; 04-NOV-2020"> <genes> <gene id="6634184" protId="UC08005045"/> <gene id="6629473" protId="UC08000334"/> </genes> </database> </species> <species name="Slackia heliotrinireducens (strain ATCC 29202 / DSM 20476 / NCTC 11029 / RHS 1)" NCBITaxId="-1045731973" taxonId="2618"> <database name="Slackia heliotrinireducens (strain ATCC 29202 / DSM 20476 / NCTC 11029 / RHS 1) chromosome, complete sequence." version="24-NOV-2009 (Rel. 114, Last updated, Version 2)"> <genes> <gene id="1383041" protId="SLAHD00263"/> <gene id="1383782" protId="SLAHD01004"/> </genes> </database> </species> <species name="Bifidobacterium longum (strain DJO10A)" NCBITaxId="-294142503" taxonId="2736"> <database name="Bifidobacterium longum (strain DJO10A) chromosome, complete sequence." version="02-SEP-2008 (Rel. 95, Last updated, Version 1)"> <genes> <gene id="511373" protId="BIFLD01410"/> <gene id="511456" protId="BIFLD01493"/> </genes> </database> </species> <species name="Chlamydiae bacterium NC_groundwater_60_Pr7_S-0.65um_42_121" NCBITaxId="-987530564" taxonId="1588"> <database name="Chlamydiae bacterium from Genbank" version="Genbank; ASM1617805v1; GCA_016178055.1; 21-DEC-2020"> <genes> <gene id="3752164" protId="U02CA01892"/> <gene id="3750705" protId="U02CA00433"/> <gene id="3750884" protId="U02CA00612"/> <gene id="3750592" protId="U02CA00320"/> </genes> </database> </species> <species name="Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1)" NCBITaxId="-699904764" taxonId="187"> <database name="Methanoculleus marisnigri JR1 (strain ATCC 35101 / DSM 1498 / JR1) chromosome, complete sequence." version="17-APR-2007 (Rel. 72, Last updated, Version 1)"> <genes> <gene id="127150" protId="METMJ00859"/> </genes> </database> </species> <species name="Niabella drilacis (strain DSM 25811 / CCM 8410 / LMG 26954 / E90)" NCBITaxId="-484787391" taxonId="2502"> <database name="Niabella drilacis (GCA_900101395) from Ensembl Bacteria 51" version="Ensembl Bacteria 51; IMG-taxon_2619619035_annotated_assembly"> <genes> <gene id="1548586" protId="NIADE04341"/> <gene id="1544332" protId="NIADE00087"/> </genes> </database> </species> <species name="Aromatoleum aromaticum (strain EbN1)" NCBITaxId="-1064144224" taxonId="3718"> <database name="Aromatoleum aromaticum (strain EbN1) chromosome, complete sequence." version="07-JUN-2011 (Rel. 130, Last updated, Version 105)"> <genes> <gene id="5221412" protId="AROAE00786"/> </genes> </database> </species> <species name="Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64 / JCM 3121 / NBRC 102363 / NCIMB 12654 / NRRL B-3342 / UNCC 431)" NCBITaxId="-1670328273" taxonId="2767"> <database name="Actinoplanes missouriensis 431 DNA, complete genome." version="29-MAR-2012 (Rel. 112, Last updated, Version 1)"> <genes> <gene id="655557" protId="ACTM402854"/> </genes> </database> </species> <species name="Caldisericum exile (strain DSM 21853 / NBRC 104410 / AZM16c01)" NCBITaxId="-91675238" taxonId="1556"> <database name="Caldisericum exile AZM16c01 DNA, complete genome." version="29-MAR-2012 (Rel. 112, Last updated, Version 1)"> <genes> <gene id="1866857" protId="CALEA00255"/> </genes> </database> </species> <species name="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4)" NCBITaxId="-800814404" taxonId="2518"> <database name="Runella slithyformis DSM 19594, complete genome." version="18-JUL-2013 (Rel. 117, Last updated, Version 6)"> <genes> <gene id="1614471" protId="RUNSL04328"/> <gene id="1612995" protId="RUNSL02852"/> </genes> </database> </species> <species name="Butyrivibrio proteoclasticus (strain ATCC 51982 / DSM 14932 / B316)" NCBITaxId="-1496538867" taxonId="2425"> <database name="Butyrivibrio proteoclasticus (strain ATCC 51982 / DSM 14932 / B316) chromosome 1, complete sequence." version="07-JUN-2011 (Rel. 130, Last updated, Version 4)"> <genes> <gene id="3435519" protId="BUTPB01641"/> <gene id="3436792" protId="BUTPB02914"/> </genes> </database> </species> <species name="Streptomyces bingchenggensis (strain BCW-1)" NCBITaxId="-342828930" taxonId="2658"> <database name="Streptomyces bingchenggensis (strain BCW-1) chromosome, complete sequence." version="08-MAR-2011 (Rel. 129, Last updated, Version 5)"> <genes> <gene id="1232567" protId="STRBB05144"/> <gene id="1232607" protId="STRBB05184"/> <gene id="1232969" protId="STRBB05546"/> <gene id="1231249" protId="STRBB03826"/> <gene id="1231572" protId="STRBB04149"/> <gene id="1230666" protId="STRBB03243"/> </genes> </database> </species> <species name="Wolbachia sp. subsp. Drosophila simulans (strain wRi)" NCBITaxId="-1823261768" taxonId="3389"> <database name="Wolbachia sp. (subsp. Drosophila simulans, strain wRi) chromosome, complete sequence." version="16-JUN-2009 (Rel. 107, Last updated, Version 1)"> <genes> <gene id="4690116" protId="WOLWR00953"/> </genes> </database> </species> <species name="Odoribacter splanchnicus (strain ATCC 29572 / DSM 20712 / CIP 104287 / JCM 15291 / NCTC 10825 / 1651/6)" NCBITaxId="-2042805044" taxonId="2523"> <database name="Odoribacter splanchnicus DSM 20712, complete genome." version="23-NOV-2011 (Rel. 110, Last updated, Version 3)"> <genes> <gene id="1513117" protId="ODOSD01697"/> <gene id="1514667" protId="ODOSD03247"/> </genes> </database> </species> <species name="Calditerrivibrio nitroreducens (strain DSM 19672 / NBRC 101217 / Yu37-1)" NCBITaxId="-1510998450" taxonId="1677"> <database name="Calditerrivibrio nitroreducens (strain DSM 19672 / NBRC 101217 / Yu37-1) chromosome, complete sequence." version="08-MAR-2011 (Rel. 129, Last updated, Version 1)"> <genes> <gene id="2309111" protId="CALNY01129"/> </genes> </database> </species> <species name="Gordonia polyisoprenivorans (strain DSM 44266 / VH2)" NCBITaxId="-1481464048" taxonId="2784"> <database name="Gordonia polyisoprenivorans VH2, complete genome." version="18-JAN-2015 (Rel. 123, Last updated, Version 6)"> <genes> <gene id="787758" protId="GORPV03479"/> </genes> </database> </species> <species name="Bacteroides stercoris" NCBITaxId="-5904041" taxonId="2547"> <database name="Bacteroides stercoris from Ensembl Bacteria 41" version="Ensembl Bacteria 41; ASM153560v1"> <genes> <gene id="1485969" protId="BACSE02284"/> <gene id="1485317" protId="BACSE01632"/> </genes> </database> </species> <species name="Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB 1408 / VKM B-1430 / H-43)" NCBITaxId="-558277511" taxonId="2512"> <database name="Marivirga tractuosa DSM 4126, complete genome." version="03-APR-2013 (Rel. 116, Last updated, Version 4)"> <genes> <gene id="1587770" protId="MARTH02157"/> </genes> </database> </species> <species name="Marinitoga piezophila (strain DSM 14283 / JCM 11233 / KA3)" NCBITaxId="-55636573" taxonId="1838"> <database name="Marinitoga piezophila KA3, complete genome." version="23-JUL-2013 (Rel. 117, Last updated, Version 3)"> <genes> <gene id="6789461" protId="MARPK00210"/> <gene id="6790241" protId="MARPK00990"/> <gene id="6789459" protId="MARPK00208"/> </genes> </database> </species> <species name="Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081 / BCRC 10696 / JCM 1002 / NBRC 13953 / NCIMB 11778 / NCTC 12712 / WDCM 00102 / Lb 14)" NCBITaxId="-701471333" taxonId="3168"> <database name="Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 complete genome" version="14-JUN-2006 (Rel. 88, Last updated, Version 3)"> <genes> <gene id="2913655" protId="LACDA01394"/> </genes> </database> </species> <species name="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / CIP 104796 / JCM 9543 / NBRC 105858 / Y-104)" NCBITaxId="-1994672209" taxonId="2745"> <database name="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y- 104) chromosome, complete sequence." version="10-AUG-2010 (Rel. 124, Last updated, Version 11)"> <genes> <gene id="1023914" protId="NAKMY04246"/> </genes> </database> </species> <species name="Veillonella parvula (strain ATCC 10790 / DSM 2008 / CCUG 5123 / JCM 12972 / NCTC 11810 / Te3)" NCBITaxId="-2005754256" taxonId="1749"> <database name="Veillonella parvula DSM 2008, complete genome." version="19-JUN-2010 (Rel. 105, Last updated, Version 2)"> <genes> <gene id="3637871" protId="VEIPT01812"/> </genes> </database> </species> <species name="Nitrospinae bacterium NC_groundwater_1753_Pr3_B-0.1um_50_18" NCBITaxId="-1238512808" taxonId="1736"> <database name="Nitrospinae bacterium from Genbank" version="Genbank; ASM1621229v1; GCA_016212295.1; 21-DEC-2020"> <genes> <gene id="3981750" protId="U04NI00361"/> </genes> </database> </species> <species name="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O)" NCBITaxId="-631544894" taxonId="2498"> <database name="Haliscomenobacter hydrossis DSM 1100, complete genome." version="12-OCT-2011 (Rel. 110, Last updated, Version 3)"> <genes> <gene id="1558337" protId="HALH101799"/> <gene id="1557917" protId="HALH101379"/> <gene id="1557268" protId="HALH100730"/> <gene id="1557053" protId="HALH100515"/> <gene id="1558946" protId="HALH102408"/> <gene id="1558079" protId="HALH101541"/> <gene id="1560087" protId="HALH103549"/> <gene id="1557719" protId="HALH101181"/> </genes> </database> </species> <species name="Rickettsia massiliae (strain Mtu5)" NCBITaxId="-1513775325" taxonId="3408"> <database name="Rickettsia massiliae (strain Mtu5) chromosome, complete sequence." version="15-JAN-2008 (Rel. 85, Last updated, Version 2)"> <genes> <gene id="4709229" protId="RICM500520"/> </genes> </database> </species> <species name="Chloroflexi bacterium FW602_bin.22" NCBITaxId="-1422666487" taxonId="1924"> <database name="Chloroflexi bacterium from Genbank" version="Genbank; ASM429777v1; GCA_004297775.1; 25-FEB-2019"> <genes> <gene id="2063402" protId="U02CH03438"/> <gene id="2063689" protId="U02CH03725"/> </genes> </database> </species> <species name="Mycoplasma penetrans (strain HF-2)" NCBITaxId="-618233113" taxonId="3025"> <database name="Mycoplasma penetrans (strain HF-2) chromosome, complete sequence." version="02-MAR-2010 (Rel. 118, Last updated, Version 118)"> <genes> <gene id="3185533" protId="MYCPE00760"/> <gene id="3185293" protId="MYCPE00520"/> <gene id="3185190" protId="MYCPE00417"/> </genes> </database> </species> <species name="Treponema azotonutricium (strain ATCC BAA-888 / DSM 13862 / ZAS-9)" NCBITaxId="-235579818" taxonId="2196"> <database name="Treponema azotonutricium ZAS-9, complete genome." version="24-MAY-2011 (Rel. 108, Last updated, Version 1)"> <genes> <gene id="6737152" protId="TREAZ02727"/> </genes> </database> </species> <species name="Caldicellulosiruptor kristjanssonii (strain ATCC 700853 / DSM 12137 / I77R1B)" NCBITaxId="-1939916421" taxonId="2367"> <database name="Caldicellulosiruptor kristjanssonii I77R1B, complete genome." version="15-MAY-2014 (Rel. 120, Last updated, Version 6)"> <genes> <gene id="3503376" protId="CALKI02401"/> <gene id="3503299" protId="CALKI02324"/> </genes> </database> </species> <species name="Acidaminococcus fermentans (strain ATCC 25085 / DSM 20731 / CCUG 9996 / CIP 106432 / VR4)" NCBITaxId="-984562180" taxonId="1750"> <database name="Acidaminococcus fermentans (strain ATCC 25085 / DSM 20731 / VR4) chromosome, complete sequence." version="08-MAR-2011 (Rel. 129, Last updated, Version 10)"> <genes> <gene id="3627921" protId="ACIFV01983"/> </genes> </database> </species> <species name="Kosmotoga olearia (strain ATCC BAA-1733 / DSM 21960 / TBF 19.5.1)" NCBITaxId="-1841916174" taxonId="1836"> <database name="Kosmotoga olearia TBF 19.5.1, complete genome." version="12-DEC-2013 (Rel. 119, Last updated, Version 7)"> <genes> <gene id="6787277" protId="KOSOT01927"/> <gene id="6786591" protId="KOSOT01241"/> <gene id="6785827" protId="KOSOT00477"/> <gene id="6786603" protId="KOSOT01253"/> </genes> </database> </species> <species name="Flavobacteriaceae bacterium (strain 3519-10)" NCBITaxId="-1888022267" taxonId="2564"> <database name="Flavobacteriaceae bacterium 3519-10, complete genome." version="23-AUG-2009 (Rel. 101, Last updated, Version 2)"> <genes> <gene id="1728195" protId="FLAB301796"/> </genes> </database> </species> <species name="Streptomyces fradiae" NCBITaxId="-528975123" taxonId="2672"> <database name="Streptomyces fradiae from Ensembl Bacteria 41" version="Ensembl Bacteria 41; ASM70000v1"> <genes> <gene id="1336216" protId="STRFR05273"/> <gene id="1336390" protId="STRFR05447"/> <gene id="1336300" protId="STRFR05357"/> <gene id="1331626" protId="STRFR00683"/> <gene id="1336120" protId="STRFR05177"/> </genes> </database> </species> <species name="Thermosipho africanus (strain TCF52B)" NCBITaxId="-1222926682" taxonId="1846"> <database name="Thermosipho africanus (strain TCF52B) chromosome, complete sequence." version="16-JUN-2009 (Rel. 107, Last updated, Version 4)"> <genes> <gene id="6799457" protId="THEAB00588"/> <gene id="6799452" protId="THEAB00583"/> <gene id="6799455" protId="THEAB00586"/> </genes> </database> </species> <species name="Thermotoga petrophila (strain ATCC BAA-488 / DSM 13995 / JCM 10881 / RKU-1)" NCBITaxId="-1992484719" taxonId="1855"> <database name="Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) chromosome, complete sequence." version="05-FEB-2008 (Rel. 86, Last updated, Version 2)"> <genes> <gene id="6811771" protId="THEP101736"/> </genes> </database> </species> <species name="Persicimonas caeni" NCBITaxId="-1600780123" taxonId="1995"> <database name="Persicimonas caeni from Refseq" version="Refseq; ASM651717v1; GCA_006517175.1; 30-JUN-2019"> <genes> <gene id="3837972" protId="PERCE01443"/> </genes> </database> </species> <species name="Desulfitobacterium hafniense (strain Y51)" NCBITaxId="-1066250490" taxonId="1983"> <database name="Desulfitobacterium hafniense Y51 genomic DNA, complete genome." version="28-JUN-2006 (Rel. 88, Last updated, Version 2)"> <genes> <gene id="3555810" protId="DESHY03308"/> </genes> </database> </species> <species name="Bifidobacterium longum subsp. longum (strain JDM301)" NCBITaxId="-940182418" taxonId="2741"> <database name="Bifidobacterium longum (subsp. longum, strain JDM301) chromosome, complete sequence." version="07-JUN-2011 (Rel. 130, Last updated, Version 6)"> <genes> <gene id="521171" protId="BIFLJ01835"/> <gene id="519344" protId="BIFLJ00008"/> <gene id="521211" protId="BIFLJ01875"/> </genes> </database> </species> <species name="Candidatus Desantisbacteria bacterium NC_groundwater_1497_Pr4_B-0.1um_33_3" NCBITaxId="-1554044245" taxonId="1589"> <database name="Candidatus Desantisbacteria bacterium from Genbank" version="Genbank; ASM1620915v1; GCA_016209155.1; 21-DEC-2020"> <genes> <gene id="3754534" protId="UC07102030"/> </genes> </database> </species> <groups> <orthologGroup taxonId="4115" id="HOG:E1032250"> <property name="TaxRange" value="LUCA"/> <orthologGroup taxonId="188"> <property name="TaxRange" value="g__Methanoculleus"/> <geneRef id="126119"/> <geneRef id="127150"/> </orthologGroup> <orthologGroup taxonId="4114"> <property name="TaxRange" value="Bacteria"/> <paralogGroup> <geneRef id="3752164"/> <geneRef id="3750705"/> <geneRef id="3750884"/> <geneRef id="3750592"/> </paralogGroup> <paralogGroup> <geneRef id="6634184"/> <geneRef id="6629473"/> </paralogGroup> <paralogGroup> <geneRef id="6813411"/> <geneRef id="6813098"/> </paralogGroup> <paralogGroup> <orthologGroup taxonId="1642"> <property name="TaxRange" value="p__Fibrobacterota"/> <geneRef id="2590252"/> <geneRef id="2592913"/> </orthologGroup> <geneRef id="2592657"/> </paralogGroup> <paralogGroup> <orthologGroup taxonId="1664"> <property name="TaxRange" value="p__CSSED10-310"/> <geneRef id="1859027"/> <geneRef id="1865372"/> </orthologGroup> <geneRef id="1857942"/> </paralogGroup> <paralogGroup> <orthologGroup taxonId="1681"> <property name="TaxRange" value="o__Deferribacterales"/> <geneRef id="2309111"/> <geneRef id="2316228"/> </orthologGroup> <geneRef id="2316858"/> </paralogGroup> <paralogGroup> <geneRef id="3999748"/> <orthologGroup taxonId="1764"> <property name="TaxRange" value="p__Nitrospirota"/> <geneRef id="3999787"/> <geneRef id="4011337"/> </orthologGroup> </paralogGroup> <paralogGroup> <orthologGroup taxonId="1859"> <property name="TaxRange" value="c__Thermotogae"/> <orthologGroup taxonId="1841"> <property name="TaxRange" value="o__Petrotogales"/> <geneRef id="6786591"/> <geneRef id="6789459"/> </orthologGroup> <orthologGroup taxonId="1848"> <property name="TaxRange" value="g__Thermosipho"/> <geneRef id="6799455"/> <geneRef id="6801857"/> </orthologGroup> </orthologGroup> <orthologGroup taxonId="1859"> <property name="TaxRange" value="c__Thermotogae"/> <orthologGroup taxonId="1841"> <property name="TaxRange" value="o__Petrotogales"/> <geneRef id="6786603"/> <orthologGroup taxonId="1840"> <property name="TaxRange" value="f__Petrotogaceae"/> <geneRef id="6789461"/> <geneRef id="6792588"/> </orthologGroup> </orthologGroup> <orthologGroup taxonId="1858"> <property name="TaxRange" value="o__Thermotogales"/> <orthologGroup taxonId="1848"> <property name="TaxRange" value="g__Thermosipho"/> <geneRef id="6799457"/> <geneRef id="6802428"/> </orthologGroup> <geneRef id="6811771"/> </orthologGroup> </orthologGroup> <orthologGroup taxonId="1859"> <property name="TaxRange" value="c__Thermotogae"/> <orthologGroup taxonId="1841"> <property name="TaxRange" value="o__Petrotogales"/> <paralogGroup> <geneRef id="6787277"/> <geneRef id="6785827"/> </paralogGroup> <geneRef id="6790241"/> </orthologGroup> <orthologGroup taxonId="1858"> <property name="TaxRange" value="o__Thermotogales"/> <geneRef id="6799452"/> <orthologGroup taxonId="1857"> <property name="TaxRange" value="g__Thermotoga"/> <geneRef id="6806302"/> <geneRef id="6809997"/> </orthologGroup> </orthologGroup> </orthologGroup> </paralogGroup> <paralogGroup> <geneRef id="2004740"/> <orthologGroup taxonId="2091"> <property name="TaxRange" value="o__Chlamydiales"/> <geneRef id="2002981"/> <geneRef id="1999249"/> </orthologGroup> <geneRef id="2004755"/> <geneRef id="2002699"/> </paralogGroup> <paralogGroup> <orthologGroup taxonId="2463"> <property name="TaxRange" value="p__Firmicutes_A"/> <geneRef id="3326457"/> <orthologGroup taxonId="2389"> <property name="TaxRange" value="c__Thermoanaerobacteria"/> <orthologGroup taxonId="2374"> <property name="TaxRange" value="g__Caldicellulosiruptor"/> <geneRef id="3503299"/> <geneRef id="3505967"/> <geneRef id="3508545"/> <geneRef id="3511014"/> <geneRef id="3513190"/> <geneRef id="3515286"/> <geneRef id="3515437"/> </orthologGroup> <geneRef id="3532338"/> </orthologGroup> <orthologGroup taxonId="2462"> <property name="TaxRange" value="c__Clostridia"/> <geneRef id="3500464"/> <geneRef id="3464538"/> <orthologGroup taxonId="2431"> <property name="TaxRange" value="f__Lachnospiraceae"/> <geneRef id="3427897"/> <geneRef id="3436792"/> <geneRef id="3440178"/> </orthologGroup> </orthologGroup> </orthologGroup> <geneRef id="3427865"/> <orthologGroup taxonId="2431"> <property name="TaxRange" value="f__Lachnospiraceae"/> <geneRef id="3429573"/> <geneRef id="3435519"/> <geneRef id="3452752"/> </orthologGroup> <orthologGroup taxonId="2374"> <property name="TaxRange" value="g__Caldicellulosiruptor"/> <geneRef id="3503376"/> <geneRef id="3505994"/> <geneRef id="3508535"/> <geneRef id="3510996"/> <geneRef id="3515418"/> </orthologGroup> </paralogGroup> <paralogGroup> <geneRef id="1133297"/> <orthologGroup taxonId="2874"> <property name="TaxRange" value="c__Actinomycetia"/> <geneRef id="1356590"/> <orthologGroup taxonId="2673"> <property name="TaxRange" value="g__Streptomyces"/> <geneRef id="1178505"/> <geneRef id="1230666"/> <geneRef id="1336390"/> </orthologGroup> </orthologGroup> <orthologGroup taxonId="2874"> <property name="TaxRange" value="c__Actinomycetia"/> <paralogGroup> <geneRef id="1349363"/> <geneRef id="1338888"/> </paralogGroup> <paralogGroup> <geneRef id="1331626"/> <orthologGroup taxonId="2674"> <property name="TaxRange" value="f__Streptomycetaceae"/> <geneRef id="1146324"/> <orthologGroup taxonId="2673"> <property name="TaxRange" value="g__Streptomyces"/> <geneRef id="1223198"/> <geneRef id="1231249"/> <geneRef id="1336120"/> </orthologGroup> </orthologGroup> <orthologGroup taxonId="2673"> <property name="TaxRange" value="g__Streptomyces"/> <paralogGroup> <geneRef id="1232567"/> <geneRef id="1232969"/> </paralogGroup> <paralogGroup> <geneRef id="1305041"/> <geneRef id="1308507"/> </paralogGroup> <geneRef id="1194792"/> <geneRef id="1279057"/> <geneRef id="1336216"/> </orthologGroup> </paralogGroup> <geneRef id="1088954"/> <orthologGroup taxonId="2744"> <property name="TaxRange" value="o__Actinomycetales"/> <paralogGroup> <geneRef id="535766"/> <orthologGroup taxonId="2703"> <property name="TaxRange" value="f__Cellulomonadaceae"/> <geneRef id="551168"/> <geneRef id="532714"/> </orthologGroup> </paralogGroup> <paralogGroup> <orthologGroup taxonId="2743"> <property name="TaxRange" value="g__Bifidobacterium"/> <paralogGroup> <geneRef id="507641"/> <geneRef id="507138"/> </paralogGroup> <geneRef id="507111"/> <orthologGroup taxonId="2728"> <property name="TaxRange" value="s__Bifidobacterium vaginale"/> <geneRef id="523868"/> <geneRef id="524069"/> </orthologGroup> <orthologGroup taxonId="2742"> <property name="TaxRange" value="s__Bifidobacterium longum"/> <geneRef id="511373"/> <geneRef id="513193"/> <geneRef id="519344"/> </orthologGroup> </orthologGroup> <orthologGroup taxonId="2743"> <property name="TaxRange" value="g__Bifidobacterium"/> <paralogGroup> <geneRef id="521171"/> <orthologGroup taxonId="2742"> <property name="TaxRange" value="s__Bifidobacterium longum"/> <geneRef id="511456"/> <geneRef id="513271"/> <geneRef id="515542"/> <geneRef id="518961"/> <geneRef id="521211"/> </orthologGroup> </paralogGroup> <geneRef id="509879"/> </orthologGroup> </paralogGroup> </orthologGroup> <orthologGroup taxonId="2777"> <property name="TaxRange" value="s__Micromonospora aurantiaca"/> <geneRef id="681577"/> <geneRef id="687758"/> </orthologGroup> </orthologGroup> <orthologGroup taxonId="2619"> <property name="TaxRange" value="f__Eggerthellaceae"/> <geneRef id="1379269"/> <geneRef id="1383782"/> </orthologGroup> <geneRef id="1383041"/> <orthologGroup taxonId="2874"> <property name="TaxRange" value="c__Actinomycetia"/> <geneRef id="1350393"/> <orthologGroup taxonId="2675"> <property name="TaxRange" value="o__Streptomycetales"/> <paralogGroup> <orthologGroup taxonId="2673"> <property name="TaxRange" value="g__Streptomyces"/> <geneRef id="1232607"/> <geneRef id="1336300"/> </orthologGroup> <orthologGroup taxonId="2673"> <property name="TaxRange" value="g__Streptomyces"/> <geneRef id="1178299"/> <geneRef id="1224277"/> <geneRef id="1231572"/> <geneRef id="1307679"/> </orthologGroup> </paralogGroup> <geneRef id="1122558"/> </orthologGroup> </orthologGroup> <orthologGroup taxonId="2873"> <property name="TaxRange" value="o__Mycobacteriales"/> <paralogGroup> <geneRef id="655557"/> <orthologGroup taxonId="2777"> <property name="TaxRange" value="s__Micromonospora aurantiaca"/> <geneRef id="682356"/> <geneRef id="688789"/> </orthologGroup> </paralogGroup> <geneRef id="1023914"/> <orthologGroup taxonId="2754"> <property name="TaxRange" value="g__Frankia"/> <geneRef id="621514"/> <geneRef id="628451"/> </orthologGroup> <geneRef id="1026936"/> <orthologGroup taxonId="2872"> <property name="TaxRange" value="f__Mycobacteriaceae"/> <paralogGroup> <geneRef id="976326"/> <geneRef id="983100"/> </paralogGroup> <geneRef id="787758"/> </orthologGroup> </orthologGroup> </paralogGroup> <paralogGroup> <orthologGroup taxonId="3498"> <property name="TaxRange" value="c__Alphaproteobacteria"/> <orthologGroup taxonId="3424"> <property name="TaxRange" value="o__Rickettsiales"/> <orthologGroup taxonId="3391"> <property name="TaxRange" value="g__Wolbachia"/> <geneRef id="4692072"/> <geneRef id="4690116"/> </orthologGroup> <geneRef id="4709229"/> </orthologGroup> <geneRef id="4386261"/> </orthologGroup> <orthologGroup taxonId="3835"> <property name="TaxRange" value="o__Burkholderiales"/> <orthologGroup taxonId="3723"> <property name="TaxRange" value="f__Rhodocyclaceae"/> <geneRef id="5218178"/> <geneRef id="5221412"/> </orthologGroup> <geneRef id="4999035"/> </orthologGroup> </paralogGroup> <geneRef id="1462420"/> <geneRef id="1464344"/> <geneRef id="1866857"/> <geneRef id="2088020"/> <geneRef id="2555311"/> <geneRef id="3720038"/> <geneRef id="3745981"/> <geneRef id="3754534"/> <geneRef id="6833741"/> <geneRef id="2568750"/> <geneRef id="3693471"/> <orthologGroup taxonId="1741"> <property name="TaxRange" value="p__Nitrospinota"/> <geneRef id="3981750"/> <geneRef id="3993906"/> </orthologGroup> <orthologGroup taxonId="1756"> <property name="TaxRange" value="c__Negativicutes"/> <geneRef id="3637871"/> <geneRef id="3627921"/> <geneRef id="3635673"/> </orthologGroup> <geneRef id="6845676"/> <geneRef id="1447900"/> <geneRef id="1411293"/> <geneRef id="2504639"/> <orthologGroup taxonId="1957"> <property name="TaxRange" value="p__Chloroflexota"/> <paralogGroup> <geneRef id="2063689"/> <geneRef id="2063402"/> </paralogGroup> <geneRef id="2050972"/> <geneRef id="2074447"/> </orthologGroup> <orthologGroup taxonId="1993"> <property name="TaxRange" value="p__Firmicutes_B"/> <geneRef id="3610672"/> <geneRef id="3617339"/> <geneRef id="3621356"/> <geneRef id="3596035"/> <orthologGroup taxonId="1985"> <property name="TaxRange" value="g__Desulfitobacterium"/> <geneRef id="3547360"/> <orthologGroup taxonId="1984"> <property name="TaxRange" value="s__Desulfitobacterium hafniense"/> <geneRef id="3552050"/> <geneRef id="3555810"/> </orthologGroup> </orthologGroup> </orthologGroup> <orthologGroup taxonId="2024"> <property name="TaxRange" value="p__Myxococcota"/> <paralogGroup> <geneRef id="3938778"/> <geneRef id="3940679"/> </paralogGroup> <geneRef id="3837972"/> </orthologGroup> <orthologGroup taxonId="2053"> <property name="TaxRange" value="p__Planctomycetota"/> <geneRef id="4055857"/> <geneRef id="4093904"/> <geneRef id="4145025"/> </orthologGroup> <orthologGroup taxonId="2142"> <property name="TaxRange" value="p__Desulfobacterota"/> <geneRef id="2474542"/> <geneRef id="2420090"/> </orthologGroup> <orthologGroup taxonId="2210"> <property name="TaxRange" value="c__Spirochaetia"/> <paralogGroup> <orthologGroup taxonId="2209"> <property name="TaxRange" value="o__Treponematales"/> <orthologGroup taxonId="2197"> <property name="TaxRange" value="f__Termitinemataceae"/> <geneRef id="6728755"/> <geneRef id="6737152"/> </orthologGroup> <geneRef id="6747593"/> </orthologGroup> <geneRef id="6748649"/> </paralogGroup> <geneRef id="6709460"/> <orthologGroup taxonId="2177"> <property name="TaxRange" value="g__Sphaerochaeta"/> <geneRef id="6715914"/> <geneRef id="6720354"/> </orthologGroup> </orthologGroup> <orthologGroup taxonId="2284"> <property name="TaxRange" value="o__Campylobacterales"/> <geneRef id="1877808"/> <geneRef id="1879932"/> </orthologGroup> <orthologGroup taxonId="2604"> <property name="TaxRange" value="p__Bacteroidota"/> <geneRef id="1795330"/> <geneRef id="1768248"/> <orthologGroup taxonId="2603"> <property name="TaxRange" value="c__Bacteroidia"/> <paralogGroup> <orthologGroup taxonId="2505"> <property name="TaxRange" value="o__Chitinophagales"/> <paralogGroup> <geneRef id="1558946"/> <geneRef id="1557719"/> <geneRef id="1557268"/> <geneRef id="1558337"/> </paralogGroup> <paralogGroup> <geneRef id="1544332"/> <geneRef id="1548586"/> </paralogGroup> </orthologGroup> <geneRef id="1560087"/> <geneRef id="1558079"/> <geneRef id="1557053"/> <geneRef id="1557917"/> </paralogGroup> <paralogGroup> <geneRef id="1514667"/> <orthologGroup taxonId="2554"> <property name="TaxRange" value="f__Bacteroidaceae"/> <paralogGroup> <orthologGroup taxonId="2553"> <property name="TaxRange" value="g__Bacteroides"/> <geneRef id="1482060"/> <geneRef id="1490294"/> <orthologGroup taxonId="2552"> <property name="TaxRange" value="s__Bacteroides fragilis"/> <geneRef id="1473247"/> <geneRef id="1477543"/> </orthologGroup> </orthologGroup> <orthologGroup taxonId="2553"> <property name="TaxRange" value="g__Bacteroides"/> <paralogGroup> <geneRef id="1485317"/> <geneRef id="1485969"/> </paralogGroup> <paralogGroup> <geneRef id="1478646"/> <geneRef id="1468287"/> </paralogGroup> <geneRef id="1482151"/> </orthologGroup> </paralogGroup> <geneRef id="1491984"/> </orthologGroup> <orthologGroup taxonId="2555"> <property name="TaxRange" value="o__Bacteroidales"/> <geneRef id="1513117"/> <geneRef id="1527745"/> <geneRef id="1534577"/> </orthologGroup> </paralogGroup> <orthologGroup taxonId="2521"> <property name="TaxRange" value="o__Cytophagales"/> <paralogGroup> <geneRef id="1614471"/> <geneRef id="1612995"/> <geneRef id="1606533"/> </paralogGroup> <orthologGroup taxonId="2514"> <property name="TaxRange" value="f__Cyclobacteriaceae"/> <geneRef id="1573848"/> <geneRef id="1587770"/> </orthologGroup> </orthologGroup> <orthologGroup taxonId="2602"> <property name="TaxRange" value="o__Flavobacteriales"/> <geneRef id="1728195"/> <geneRef id="1684333"/> </orthologGroup> </orthologGroup> </orthologGroup> <orthologGroup taxonId="3268"> <property name="TaxRange" value="c__Bacilli"/> <paralogGroup> <geneRef id="3185293"/> <geneRef id="3185190"/> <geneRef id="3185533"/> </paralogGroup> <orthologGroup taxonId="3172"> <property name="TaxRange" value="g__Lactobacillus"/> <paralogGroup> <geneRef id="2926089"/> <geneRef id="2924927"/> <geneRef id="2925914"/> </paralogGroup> <geneRef id="2908632"/> <orthologGroup taxonId="3171"> <property name="TaxRange" value="s__Lactobacillus delbrueckii"/> <geneRef id="2911761"/> <geneRef id="2913655"/> <geneRef id="2915450"/> <geneRef id="2917344"/> </orthologGroup> </orthologGroup> </orthologGroup> </orthologGroup> </orthologGroup> </groups> </orthoXML>