Information of genome Agaricomycetes incertae sedis

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Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Ancestral genome of Agaricomycetes incertae sedis

with 19 descendant species and 19997 (7962 well supported) ancestral genes (HOGs).

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Common name:	Agaricomycetes incertae sedis
NCBI taxonomic identifier:	355688
Number of ancestral genes:	19997 (all HOGs) 7962 (well supported HOGs ?)
Number of ancestral genes included in ancestral contigs:	7168
Number of descendant extant species:	19

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Code	Scientific Name	Common Name	Last Update	# of Sequences	Taxon Id	D.
PYCCI	Pycnoporus cinnabarinus	Cinnabar-red polypore	2023-Feb-16	10233	5643	E
TRAPU	Trametes pubescens	White-rot fungus	2020-Nov-16	14438	154538	E
TRAVS	Trametes versicolor (strain FP-101664)	White-rot fungus	2012-Dec-04	14210	717944	E
DICSQ	Dichomitus squalens (strain LYAD-421)	Western red white-rot fungus	2012-Dec-04	12244	732165	E
GRIFR	Grifola frondosa	Maitake	2018-Sep-26	15039	5627	E
PHLGI	Phlebiopsis gigantea	White-rot fungus	2012-Dec-17	11880	82310	E
PHACH	Phanerochaete chrysosporium	White-rot fungus	2013-Jan-13	9934	2822231	E
POSPM	Postia placenta (strain ATCC 44394 / Madison 698-R)	Brown rot fungus	2012-Dec-03	8805	561896	E
WOLCO	Wolfiporia cocos (strain MD-104)	Brown rot fungus	2012-Dec-17	12726	742152	E
FOMPI	Fomitopsis pinicola (strain FP-58527)	Brown rot fungus	2012-Dec-04	13812	743788	E
GLOTA	Gloeophyllum trabeum (strain ATCC 11539 / FP-39264 / Madison 617)	Brown rot fungus	2021-Sep-29	11755	670483	E
GLOTR	Gloeophyllum trabeum	Brown rot fungus	2012-Dec-04	11782	104355	E
HETAN	Heterobasidion annosum	Root rot fungus	2013-Jan-13	12162	13563	E
STEHR	Stereum hirsutum (strain FP-91666)	White-rot fungus	2012-Dec-04	14024	721885	E
FOMME	Fomitiporia mediterranea (strain MF3/22)	Grapevine white-rot fungus	2012-Dec-04	11295	694068	E
AURST	Auricularia subglabra (strain TFB-10046 / SS5)	White-rot fungus	2013-Jan-10	23440	717982	E
PUNST	Punctularia strigosozonata (strain HHB-11173)	White-rot fungus	2012-Dec-17	11495	741275	E
THACA	Thanatephorus cucumeris (strain AG1-IA)	Rice sheath blight fungus	2023-Feb-16	10489	983506	E
SERID	Serendipita indica (strain DSM 11827)		2012-Dec-04	11712	1109443	E

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