Information of genome Amoebozoa

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Ancestral genome of Amoebozoa

with 11 descendant species and 12450 (4855 well supported) ancestral genes (HOGs).

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Common name:	Amoebozoa
NCBI taxonomic identifier:	554915
Number of ancestral genes:	12450 (all HOGs) 4855 (well supported HOGs ?)
Number of ancestral genes included in ancestral contigs:	4140
Number of descendant extant species:	11

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Code	Scientific Name	Common Name	Last Update	# of Sequences	Taxon Id	D.
ACACA	Acanthamoeba castellanii str. Neff		2023-Nov-19	14969	1257118	E
ENTH1	Entamoeba histolytica (strain ATCC 30459 / HM-1:IMSS / ABRM)		2023-Mar-07	8113	294381	E
ENTHI	Entamoeba histolytica		2015-Dec-15	7729	5759	E
ENTDS	Entamoeba dispar (strain ATCC PRA-260 / SAW760)		2016-Jul-03	8419	370354	E
ENTIV	Entamoeba invadens IP1		2023-Nov-26	11997	370355	E
ENTNP	Entamoeba nuttalli (strain P19)	Amoeba	2016-Jul-03	6177	1076696	E
POLPP	Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500)		2017-Aug-12	12367	670386	E
CAVFA	Cavenderia fasciculata (strain SH3)	Slime mold	2019-Mar-25	12165	1054147	E
DICPU	Dictyostelium purpureum	Slime mold	2012-Jan-25	12317	5786	E
DICDI	Dictyostelium discoideum	Slime mold	2009-Sep-02	12921	44689	E
TIELA	Tieghemostelium lacteum	Slime mold	2023-Mar-07	10225	361077	E

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