Information of genome Apocrita

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Ancestral genome of Apocrita

with 12 descendant species and 22454 (9877 well supported) ancestral genes (HOGs).

‹

Common name:	Apocrita
NCBI taxonomic identifier:	7400
Number of ancestral genes:	22454 (all HOGs) 9877 (well supported HOGs ?)
Number of ancestral genes included in ancestral contigs:	7982
Number of descendant extant species:	12

Loading, please wait...

Code	Scientific Name	Common Name	Last Update	# of Sequences	Taxon Id	D.
NASVI	Nasonia vitripennis	Parasitic wasp	2015-Jun-16	16986	7425	E
TRIPJ	Trichogramma pretiosum	Parasitoid wasp	2023-Mar-07	21161	7493	E
APIME	Apis mellifera	Honeybee	2019-Apr-07	15314	7460	E
BOMIM	Bombus impatiens	Bumblebee	2016-May-31	15842	132113	E
DUFNO	Dufourea novaeangliae	Sweat bee	2023-Oct-11	12157	178035	E
SOLIN	Solenopsis invicta	Red imported fire ant	2014-Mar-02	16378	13686	E
ATTCE	Atta cephalotes	Leafcutter ant	2012-Jan-18	17766	12957	E
ACREC	Acromyrmex echinatior	Panamanian leafcutter ant	2023-Oct-11	20241	103372	E
LINHU	Linepithema humile	Argentine ant	2016-Dec-15	17630	83485	E
CAMFO	Camponotus floridanus	Florida carpenter ant	2016-Aug-03	14746	104421	E
HARSA	Harpegnathos saltator	Jerdon's jumping ant	2016-Aug-03	14985	610380	E
OOCBI	Ooceraea biroi	Ant	2016-Aug-03	16303	2015173	E

Showing 1 to 12 of 12 rows rows per page