Information of genome Cercopithecinae

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Ancestral genome of Cercopithecinae

with 7 descendant species and 27494 (22370 well supported) ancestral genes (HOGs).

‹

Common name:	Cercopithecinae
NCBI taxonomic identifier:	9528
Number of ancestral genes:	27494 (all HOGs) 22370 (well supported HOGs ?)
Number of ancestral genes included in ancestral contigs:	20751
Number of descendant extant species:	7

Loading, please wait...

Code	Scientific Name	Common Name	Last Update	# of Sequences	Taxon Id	D.
CERAT	Cercocebus atys	Sooty mangabey	2018-Nov-05	46067	9531	E
MACFA	Macaca fascicularis	Crab-eating macaque	2018-Nov-21	46148	9541	E
MACMU	Macaca mulatta	Rhesus macaque	2022-Jun-19	48770	9544	E
MACNE	Macaca nemestrina	Pig-tailed macaque	2018-Nov-05	46238	9545	E
PAPAN	Papio anubis	Olive baboon	2022-Jun-19	43934	9555	E
MANLE	Mandrillus leucophaeus	Drill	2018-Nov-05	40903	9568	E
CHLSB	Chlorocebus sabaeus	Green monkey	2014-Oct-01	19172	60711	E

Showing 1 to 7 of 7 rows