Information of genome Conoidasida

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Ancestral genome of Conoidasida

with 11 descendant species and 7222 (3244 well supported) ancestral genes (HOGs).

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Common name:	Conoidasida
NCBI taxonomic identifier:	1280412
Number of ancestral genes:	7222 (all HOGs) 3244 (well supported HOGs ?)
Number of ancestral genes included in ancestral contigs:	1066
Number of descendant extant species:	11

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Code	Scientific Name	Common Name	Last Update	# of Sequences	Taxon Id	D.
GRENI	Gregarina niphandrodes	Septate eugregarine	2015-Dec-15	6285	110365	E
EIMAC	Eimeria acervulina	Coccidian parasite	2016-Mar-23	6862	5801	E
EIMTE	Eimeria tenella	Coccidian parasite	2019-Mar-21	8599	5802	E
EIMMA	Eimeria maxima	Coccidian parasite	2016-Mar-23	6057	5804	E
CRYPI	Cryptosporidium parvum (strain Iowa II)		2016-Jul-03	3804	353152	E
CRYPV	Cryptosporidium parvum		2007-Jul-22	3804	5807	E
CRYMR	Cryptosporidium muris (strain RN66)		2016-Jul-03	3928	441375	E
TOXGV	Toxoplasma gondii (strain ATCC 50861 / VEG)		2018-Aug-22	8410	432359	E
TOXGO	Toxoplasma gondii		2012-May-01	7980	5811	E
HAMHA	Hammondia hammondi	Parasitic protozoan	2015-Dec-15	8002	99158	E
NEOCL	Neospora caninum (strain Liverpool)		2023-Dec-20	6936	572307	E

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