Information of genome Fusarium

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Ancestral genome of Fusarium

with 8 descendant species and 21596 (17992 well supported) ancestral genes (HOGs).

‹

Common name:	Fusarium
NCBI taxonomic identifier:	5506
Number of ancestral genes:	21596 (all HOGs) 17992 (well supported HOGs ?)
Number of ancestral genes included in ancestral contigs:	13201
Number of descendant extant species:	8

Loading, please wait...

Code	Scientific Name	Common Name	Last Update	# of Sequences	Taxon Id	D.
FUSO4	Fusarium oxysporum f. sp. lycopersici (strain 4287 / CBS 123668 / FGSC 9935 / NRRL 34936)	Fusarium vascular wilt of tomato	2012-Nov-15	16590	426428	E
FUSC1	Fusarium oxysporum f. sp. cubense (strain race 1)	Panama disease fungus	2017-Nov-07	15438	1229664	E
NECHA	Nectria haematococca		2013-Jan-13	15671	140110	E
FUSV7	Fusarium vanettenii (strain ATCC MYA-4622 / CBS 123669 / FGSC 9596 / NRRL 45880 / 77-13-4)		2021-Sep-28	15705	660122	E
GIBM7	Gibberella moniliformis (strain M3125 / FGSC 7600)	Maize ear and stalk rot fungus	2017-Nov-08	14181	334819	E
FUSCU	Fusarium culmorum		2022-Feb-21	12378	5516	E
GIBZA	Gibberella zeae	Wheat head blight fungus	2012-Dec-04	13320	5518	E
FUSPO	Fusarium poae		2020-Nov-16	14740	36050	E

Showing 1 to 8 of 8 rows