Information of genome Glomerellales

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Ancestral genome of Glomerellales

with 6 descendant species and 16551 (11885 well supported) ancestral genes (HOGs).

‹

Common name:	Glomerellales
NCBI taxonomic identifier:	1028384
Number of ancestral genes:	16551 (all HOGs) 11885 (well supported HOGs ?)
Number of ancestral genes included in ancestral contigs:	8495
Number of descendant extant species:	6

Loading, please wait...

Code	Scientific Name	Common Name	Last Update	# of Sequences	Taxon Id	D.
VERDV	Verticillium dahliae (strain VdLs.17 / ATCC MYA-4575 / FGSC 10137)	Verticillium wilt	2018-Mar-05	10535	498257	E
VERDA	Verticillium dahliae	Verticillium wilt	2012-Dec-17	10529	27337	E
VERA1	Verticillium alfalfae (strain VaMs.102 / ATCC MYA-4576 / FGSC 10136)	Verticillium wilt of alfalfa	2021-Jul-04	10237	526221	E
COLGC	Colletotrichum gloeosporioides (strain Cg-14)	Anthracnose fungus	2020-Nov-16	16538	1237896	E
COLGR	Colletotrichum graminicola	Maize anthracnose fungus	2015-Sep-29	12019	31870	E
COLSU	Colletotrichum sublineola	Sorghum anthracnose fungus	2015-Sep-29	12693	1173701	E

Showing 1 to 6 of 6 rows