Information of genome Leotiomycetes

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Ancestral genome of Leotiomycetes

with 7 descendant species and 16833 (9380 well supported) ancestral genes (HOGs).

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Common name:	Leotiomycetes
NCBI taxonomic identifier:	147548
Number of ancestral genes:	16833 (all HOGs) 9380 (well supported HOGs ?)
Number of ancestral genes included in ancestral contigs:	7288
Number of descendant extant species:	7

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Code	Scientific Name	Common Name	Last Update	# of Sequences	Taxon Id	D.
BOTFB	Botryotinia fuckeliana (strain B05.10)		2007-Sep-16	16299	332648	E
SCLS1	Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1)	White mold	2012-Dec-04	14446	665079	E
MARBU	Marssonina brunnea f. sp. multigermtubi (strain MB_m1)	Marssonina leaf spot fungus	2020-Nov-16	10027	1072389	E
GLAL2	Glarea lozoyensis (strain ATCC 20868 / MF5171)		2023-Feb-16	13083	1116229	E
SCYLI	Scytalidium lignicola	Hyphomycete	2022-Feb-24	12795	5539	E
BLUGR	Blumeria graminis	Powdery mildew	2015-Sep-29	6458	34373	E
UNCNE	Uncinula necator	Grape powdery mildew	2022-Jun-13	6484	52586	E

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