Information of genome Microsporidia

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Ancestral genome of Microsporidia

with 11 descendant species and 2987 (1318 well supported) ancestral genes (HOGs).

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Common name:	Microsporidia
NCBI taxonomic identifier:	6029
Number of ancestral genes:	2987 (all HOGs) 1318 (well supported HOGs ?)
Number of ancestral genes included in ancestral contigs:	732
Number of descendant extant species:	11

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Code	Scientific Name	Common Name	Last Update	# of Sequences	Taxon Id	D.
NOSCE	Nosema ceranae (strain BRL01)	Microsporidian parasite	2019-Jan-22	2060	578460	E
NOSB1	Nosema bombycis (strain CQ1 / CVCC 102059)	Microsporidian parasite	2022-May-22	4468	578461	E
VITCO	Vittaforma corneae (strain ATCC 50505)	Microsporidian parasite	2022-May-22	2238	993615	E
ENCCU	Encephalitozoon cuniculi (strain GB-M1)		2009-Sep-15	1895	284813	E
ENTBH	Enterocytozoon bieneusi (strain H348)	Microsporidian parasite	2022-May-22	3632	481877	E
SPRLO	Spraguea lophii (strain 42_110)	Microsporidian parasite	2023-Feb-16	2499	1358809	E
TRAHO	Trachipleistophora hominis	Microsporidian parasite	2020-Nov-16	3212	72359	E
VAVCU	Vavraia culicis (isolate floridensis)	Microsporidian parasite	2018-Mar-05	2773	948595	E
NEMP3	Nematocida parisii (strain ERTm3)	Nematode killer fungus	2022-May-22	2726	935791	E
NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	Nematode killer fungus	2022-May-22	2770	944018	E
EDHAE	Edhazardia aedis (strain USNM 41457)	Microsporidian parasite	2022-May-22	4190	1003232	E

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