Information of genome Mycosphaerellaceae

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Ancestral genome of Mycosphaerellaceae

with 5 descendant species and 13311 (13311 well supported) ancestral genes (HOGs).

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Common name:	Mycosphaerellaceae
NCBI taxonomic identifier:	93133
Number of ancestral genes:	13311 (all HOGs) 13311 (well supported HOGs ?)
Number of ancestral genes included in ancestral contigs:	8695
Number of descendant extant species:	5

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Code	Scientific Name	Common Name	Last Update	# of Sequences	Taxon Id	D.
PASFU	Passalora fulva	Tomato leaf mold	2012-Dec-17	13957	5499	E
DOTSN	Dothistroma septosporum (strain NZE10 / CBS 128990)	Red band needle blight fungus	2018-Mar-05	12415	675120	E
SPHMS	Sphaerulina musiva (strain SO2202)	Poplar stem canker fungus	2019-Mar-20	10156	692275	E
ZYMTI	Zymoseptoria tritici (strain CBS 115943 / IPO323)	Speckled leaf blotch fungus	2023-Feb-16	10931	336722	E
ZYMTR	Zymoseptoria tritici	Speckled leaf blotch fungus	2015-Sep-29	10914	1047171	E

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