Information of genome Nematoda

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Ancestral genome of Nematoda

with 23 descendant species and 29604 (6188 well supported) ancestral genes (HOGs).

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Common name:	Nematoda
NCBI taxonomic identifier:	6231
Number of ancestral genes:	29604 (all HOGs) 6188 (well supported HOGs ?)
Number of ancestral genes included in ancestral contigs:	3252
Number of descendant extant species:	23

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Code	Scientific Name	Common Name	Last Update	# of Sequences	Taxon Id	D.
TOXCA	Toxocara canis	Canine roundworm	2021-Aug-31	18596	6265	E
BRUMA	Brugia malayi	Filarial nematode worm	2014-Mar-02	14312	6279	E
ONCVO	Onchocerca volvulus		2014-Oct-26	12948	6282	E
WUCBA	Wuchereria bancrofti		2021-Aug-31	13058	6293	E
LOALO	Loa loa	Eye worm	2014-Oct-26	14863	7209	E
LITSI	Litomosoides sigmodontis	Filarial nematode worm	2024-Jan-25	10014	42156	E
THECL	Thelazia callipaeda	Oriental eyeworm	2018-Jan-28	10912	103827	E
MELHA	Meloidogyne hapla	Root-knot nematode worm	2018-Jan-28	14420	6305	E
STRRB	Strongyloides ratti	Parasitic roundworm	2016-May-31	12413	34506	E
CAEBR	Caenorhabditis briggsae		2014-Jun-12	21610	6238	E
CAEEL	Caenorhabditis elegans		2016-Nov-17	20869	6239	E
CAERE	Caenorhabditis remanei		2009-Jul-07	31096	31234	E
CAEBE	Caenorhabditis brenneri		2009-Jul-05	25385	135651	E
CAEJA	Caenorhabditis japonica	Nematode	2008-Nov-12	18971	281687	E
PRIPA	Pristionchus pacificus	Nematode	2008-Nov-12	29363	54126	E
HAECO	Haemonchus contortus	Barber pole worm	2021-Aug-24	21238	6289	E
HAEPC	Haemonchus placei	Barber's pole worm	2021-Aug-31	21928	6290	E
NIPBR	Nippostrongylus brasiliensis	Rat hookworm	2021-Aug-31	22796	27835	E
NECAM	Necator americanus	Human hookworm	2021-Aug-31	19153	51031	E
ANGCS	Angiostrongylus costaricensis	Nematode worm	2021-Aug-31	13417	334426	E
TRISP	Trichinella spiralis	Trichina worm	2012-Apr-17	15661	6334	E
TRIBR	Trichinella britovi	Parasitic roundworm	2024-Jan-25	20918	45882	E
ROMCU	Romanomermis culicivorax	Nematode worm	2021-Sep-19	48376	13658	E

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