Information of genome Saccharomycetaceae

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Ancestral genome of Saccharomycetaceae

with 17 descendant species and 7140 (4900 well supported) ancestral genes (HOGs).

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Common name:	Saccharomycetaceae
NCBI taxonomic identifier:	4893
Number of ancestral genes:	7140 (all HOGs) 4900 (well supported HOGs ?)
Number of ancestral genes included in ancestral contigs:	4759
Number of descendant extant species:	17

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Code	Scientific Name	Common Name	Last Update	# of Sequences	Taxon Id	D.
YEAST	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Baker's yeast	2024-Jan-10	6600	559292	E
YEASA	Saccharomyces cerevisiae (strain AWRI796)	Baker's yeast	2018-Mar-05	3786	764097	E
YEASV	Saccharomyces cerevisiae (strain VIN 13)	Baker's yeast	2018-Mar-05	3930	764099	E
YEASO	Saccharomyces cerevisiae (strain FostersO)	Baker's yeast	2017-Aug-16	3575	764101	E
ZYGRO	Zygosaccharomyces rouxii		2015-Sep-29	4987	4956	E
ASHGO	Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)	Yeast	2014-Mar-24	4757	284811	E
ERECY	Eremothecium cymbalariae (strain CBS 270.75 / DBVPG 7215 / KCTC 17166 / NRRL Y-17582)	Yeast	2021-Sep-29	4434	931890	E
TETBL	Tetrapisispora blattae (strain ATCC 34711 / CBS 6284 / DSM 70876 / NBRC 10599 / NRRL Y-10934 / UCD 77-7)	Yeast	2020-Nov-16	5389	1071380	E
TETPH	Tetrapisispora phaffii (strain ATCC 24235 / CBS 4417 / NBRC 1672 / NRRL Y-8282 / UCD 70-5)	Yeast	2020-Nov-16	5253	1071381	E
NAUCC	Naumovozyma castellii (strain ATCC 76901 / BCRC 22586 / CBS 4309 / NBRC 1992 / NRRL Y-12630)	Yeast	2020-Nov-16	5592	1064592	E
NAUDC	Naumovozyma dairenensis (strain ATCC 10597 / BCRC 20456 / CBS 421 / NBRC 0211 / NRRL Y-12639)		2020-Nov-16	5548	1071378	E
KLULA	Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)	Yeast	2005-Oct-09	5230	284590	E
CANGA	Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)	Yeast	2009-Sep-14	4752	284593	E
LACFM	Lachancea fermentati		2020-Nov-16	5233	4955	E
LACTC	Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284)	Yeast	2018-Mar-04	5092	559295	E
VANPO	Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17)		2018-Mar-05	5367	436907	E
KAZNA	Kazachstania naganishii (strain ATCC MYA-139 / BCRC 22969 / CBS 8797 / KCTC 17520 / NBRC 10181 / NCYC 3082 / Yp74L-3)	Yeast	2017-Aug-16	5321	1071383	E

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