Information of genome Sordariales

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Ancestral genome of Sordariales

with 7 descendant species and 11787 (9258 well supported) ancestral genes (HOGs).

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Common name:	Sordariales
NCBI taxonomic identifier:	5139
Number of ancestral genes:	11787 (all HOGs) 9258 (well supported HOGs ?)
Number of ancestral genes included in ancestral contigs:	7071
Number of descendant extant species:	7

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Code	Scientific Name	Common Name	Last Update	# of Sequences	Taxon Id	D.
NEUCR	Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)		2010-Feb-24	7569	367110	E
NEUT9	Neurospora tetrasperma (strain FGSC 2509 / P0656)		2012-Dec-04	10374	510952	E
SORMK	Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell)		2020-Nov-16	9898	771870	E
CHAGB	Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970)	Soil fungus	2021-Sep-29	11048	306901	E
CHATD	Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)		2022-Jun-13	7165	759272	E
MYCTT	Myceliophthora thermophila (strain ATCC 42464 / BCRC 31852 / DSM 1799)		2022-Feb-21	9097	573729	E
THETO	Thermothelomyces thermophilus		2012-Dec-17	9087	78579	E

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