Information of genome Spirurina

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Ancestral genome of Spirurina

with 7 descendant species and 16381 (8602 well supported) ancestral genes (HOGs).

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Common name:	Spirurina
NCBI taxonomic identifier:	6274
Number of ancestral genes:	16381 (all HOGs) 8602 (well supported HOGs ?)
Number of ancestral genes included in ancestral contigs:	4687
Number of descendant extant species:	7

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Code	Scientific Name	Common Name	Last Update	# of Sequences	Taxon Id	D.
TOXCA	Toxocara canis	Canine roundworm	2021-Aug-31	18596	6265	E
BRUMA	Brugia malayi	Filarial nematode worm	2014-Mar-02	14312	6279	E
ONCVO	Onchocerca volvulus		2014-Oct-26	12948	6282	E
WUCBA	Wuchereria bancrofti		2021-Aug-31	13058	6293	E
LOALO	Loa loa	Eye worm	2014-Oct-26	14863	7209	E
LITSI	Litomosoides sigmodontis	Filarial nematode worm	2024-Jan-25	10014	42156	E
THECL	Thelazia callipaeda	Oriental eyeworm	2018-Jan-28	10912	103827	E

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