Information of genome Triticeae

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Ancestral genome of Triticeae

with 6 descendant species and 58700 (40709 well supported) ancestral genes (HOGs).

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Common name:	Triticeae
NCBI taxonomic identifier:	147389
Number of ancestral genes:	58700 (all HOGs) 40709 (well supported HOGs ?)
Number of ancestral genes included in ancestral contigs:	26887
Number of descendant extant species:	6

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Code	Scientific Name	Common Name	Last Update	# of Sequences	Taxon Id	D.
HORVV	Hordeum vulgare subsp. vulgare	Domesticated barley	2018-Mar-21	194879	112509	E
WHEAT	Triticum aestivum	Wheat	2018-Aug-18	137010	4565	E
TRITD	Triticum turgidum subsp. durum	Durum wheat	2022-May-22	196105	4567	E
TRIUA	Triticum urartu	Red wild einkorn	2013-Aug-19	32635	4572	E
AEGTS	Aegilops tauschii subsp. strangulata	Goatgrass	2023-Mar-06	58655	200361	E
AEGTA	Aegilops tauschii	Tausch's goatgrass	2013-Dec-19	33795	37682	E

Showing 1 to 6 of 6 rows