Information of genome Trypanosomatidae

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Ancestral genome of Trypanosomatidae

with 12 descendant species and 8596 (5725 well supported) ancestral genes (HOGs).

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Common name:	Trypanosomatidae
NCBI taxonomic identifier:	5654
Number of ancestral genes:	8596 (all HOGs) 5725 (well supported HOGs ?)
Number of ancestral genes included in ancestral contigs:	5490
Number of descendant extant species:	12

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Code	Scientific Name	Common Name	Last Update	# of Sequences	Taxon Id	D.
TRYRA	Trypanosoma rangeli		2022-Mar-27	10104	5698	E
TRYB2	Trypanosoma brucei brucei (strain 927/4 GUTat10.1)		2005-Oct-19	6785	185431	E
TRYCC	Trypanosoma cruzi (strain CL Brener)		2019-Mar-25	19607	353153	E
TRYVY	Trypanosoma vivax (strain Y486)		2024-Jan-09	17806	1055687	E
TRYCI	Trypanosoma congolense (strain IL3000)		2018-Dec-12	5984	1068625	E
LEIBR	Leishmania braziliensis		2007-Jul-22	8019	5660	E
LEIIN	Leishmania infantum		2007-Jul-30	8031	5671	E
LEIDB	Leishmania donovani (strain BPK282A1)		2015-Nov-26	7950	981087	E
LEIMA	Leishmania major strain Friedlin		2014-Mar-24	8018	347515	E
LEIMU	Leishmania mexicana (strain MHOM/GT/2001/U1103)		2016-Jul-03	7890	929439	E
LEPSE	Leptomonas seymouri		2017-Aug-12	8485	5684	E
LEPPY	Leptomonas pyrrhocoris	Firebug parasite	2023-Mar-07	13893	157538	E

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