Information of genome Ustilaginomycotina

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Ancestral genome of Ustilaginomycotina

with 6 descendant species and 7227 (5343 well supported) ancestral genes (HOGs).

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Common name:	Ustilaginomycotina
NCBI taxonomic identifier:	452284
Number of ancestral genes:	7227 (all HOGs) 5343 (well supported HOGs ?)
Number of ancestral genes included in ancestral contigs:	2081
Number of descendant extant species:	6

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Code	Scientific Name	Common Name	Last Update	# of Sequences	Taxon Id	D.
USTHO	Ustilago hordei	Barley covered smut fungus	2015-Sep-29	7107	120017	E
USTMA	Ustilago maydis (strain 521 / FGSC 9021)		2007-Sep-17	6510	237631	E
KALBG	Kalmanozyma brasiliensis (strain GHG001)	Yeast	2021-May-02	5765	1365824	E
MALGO	Malassezia globosa (strain ATCC MYA-4612 / CBS 7966)	Dandruff-associated fungus	2019-Jan-22	4286	425265	E
MALS4	Malassezia sympodialis (strain ATCC 42132)	Atopic eczema-associated yeast	2020-Nov-16	4502	1230383	E
TILAU	Tilletiaria anomala (strain ATCC 24038 / CBS 436.72 / UBC 951)		2020-Nov-16	6808	1037660	E

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