Information of genome f__Alteromonadaceae

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Ancestral genome of f__Alteromonadaceae

with 10 descendant species and 8508 (4920 well supported) ancestral genes (HOGs).

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Common name:	f__Alteromonadaceae
Taxonomic identifier:	-409620325
Number of ancestral genes:	8508 (all HOGs) 4920 (well supported HOGs ?)
Number of ancestral genes included in ancestral contigs:	5665
Number of descendant extant species:	10

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Code	Scientific Name	Common Name	Last Update	# of Sequences	Taxon Id	D.
PSET1	Pseudoalteromonas translucida (strain TAC 125)		2014-Mar-24	3483	-388220599	B
PSEU9	Pseudoalteromonas sp. (strain SM9913)		2011-Oct-02	3695	-162451695	B
PSEA6	Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087)		2006-Nov-21	4271	-1484922533	B
IDILO	Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR)		2014-Mar-24	2609	-1018822587	B
COLP3	Colwellia psychrerythraea (strain 34H / ATCC BAA-681)		2014-Mar-24	4881	-615581284	B
ALTME	Alteromonas macleodii (strain English Channel 673)		2013-Aug-19	3876	-2019819893	B
ALTMB	Alteromonas macleodii (strain Balearic Sea AD45)		2014-Nov-05	3948	-915645704	B
ALTMS	Alteromonas macleodii (strain Black Sea 11)		2013-Oct-03	3751	-1327165189	B
ALTMD	Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / Deep ecotype)		2008-Oct-26	4046	-1248192050	B
ALTNA	Alteromonas naphthalenivorans		2015-Jun-16	4338	-563329299	B

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