Information of genome f__Desulfitobacteriaceae

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Ancestral genome of f__Desulfitobacteriaceae

with 6 descendant species and 7796 (5285 well supported) ancestral genes (HOGs).

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Common name:	f__Desulfitobacteriaceae
Taxonomic identifier:	-554795121
Number of ancestral genes:	7796 (all HOGs) 5285 (well supported HOGs ?)
Number of ancestral genes included in ancestral contigs:	5784
Number of descendant extant species:	6

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Code	Scientific Name	Common Name	Last Update	# of Sequences	Taxon Id	D.
DESHY	Desulfitobacterium hafniense (strain Y51)		2006-Aug-16	5015	-1066250490	B
DESHD	Desulfitobacterium hafniense (strain DSM 10664 / DCB-2)		2009-Dec-15	4852	-263613146	B
DESDL	Desulfitobacterium dichloroeliminans (strain LMG P-21439 / DCA1)		2013-Aug-19	3294	-1286676296	B
DESOD	Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 / VKM B-1628 / Singapore I)		2016-Sep-14	5215	-1654186542	B
DESMD	Desulfosporosinus meridiei (strain ATCC BAA-275 / DSM 13257 / KCTC 12902 / NCIMB 13706 / S10)		2014-Oct-02	4340	-1224312185	B
DESAJ	Desulfosporosinus acidiphilus (strain DSM 22704 / JCM 16185 / SJ4)		2013-Oct-03	4469	-250102842	B

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