Information of genome f__Enterobacteriaceae_A

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Ancestral genome of f__Enterobacteriaceae_A

with 16 descendant species and 987 (683 well supported) ancestral genes (HOGs).

‹

Common name:	f__Enterobacteriaceae_A
Taxonomic identifier:	-75224504
Number of ancestral genes:	987 (all HOGs) 683 (well supported HOGs ?)
Number of ancestral genes included in ancestral contigs:	822
Number of descendant extant species:	16

Loading, please wait...

Code	Scientific Name	Common Name	Last Update	# of Sequences	Taxon Id	D.
ZINIC	Zinderia insecticola (strain CARI)		2013-Jan-10	206	-1909611042	B
BLOPB	Blochmannia pennsylvanicus (strain BPEN)		2014-Mar-24	610	-2126047277	B
BLOVB	Blochmannia vafer (strain BVAF)		2012-Nov-13	587	-1570172426	B
BLOFL	Blochmannia floridanus		2010-Mar-21	589	-410928422	B
BUCSC	Buchnera aphidicola subsp. Schlechtendalia chinensis		2017-Nov-07	499	-2071847352	B
BUCAP	Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)		2010-Mar-21	560	-1551281147	B
BUCCC	Buchnera aphidicola subsp. Cinara cedri (strain Cc)		2007-Mar-08	365	-1486567176	B
BUCBP	Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)		2010-Mar-21	507	-1055833514	B
BUCAF	Buchnera aphidicola subsp. Acyrthosiphon pisum (strain JF99)		2014-Oct-02	590	-1376262112	B
BUCAI	Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)		2010-Mar-21	571	-1120314915	B
BUCA0	Buchnera aphidicola subsp. Acyrthosiphon pisum (strain LL01)		2012-Nov-29	577	-379999084	B
BUCAT	Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7)		2009-May-26	553	-206118232	B
BUCAJ	Buchnera aphidicola subsp. Acyrthosiphon pisum (strain JF98)		2011-May-26	477	-85901357	B
BUCA5	Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A)		2009-Jun-25	555	-30475204	B
RIEPU	Riesia pediculicola (strain USDA)		2014-Mar-02	538	-469425099	B
WIGBR	Wigglesworthia glossinidia brevipalpis		2010-Mar-21	612	-368503440	B

Showing 1 to 16 of 16 rows rows per page