Information of genome f__Lachnospiraceae

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Ancestral genome of f__Lachnospiraceae

with 8 descendant species and 7605 (3660 well supported) ancestral genes (HOGs).

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Common name:	f__Lachnospiraceae
Taxonomic identifier:	-693105244
Number of ancestral genes:	7605 (all HOGs) 3660 (well supported HOGs ?)
Number of ancestral genes included in ancestral contigs:	4831
Number of descendant extant species:	8

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Code	Scientific Name	Common Name	Last Update	# of Sequences	Taxon Id	D.
LACE2	Lachnospira eligens (strain ATCC 27750 / DSM 3376 / VPI C15-48 / C15-B4)		2009-Nov-22	2761	-2125443666	B
BUTPB	Butyrivibrio proteoclasticus (strain ATCC 51982 / DSM 14932 / B316)		2012-Jan-19	3799	-1496538867	B
LACP7	Lachnoclostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)		2008-Mar-24	3889	-1404994984	B
CLOSS	Clostridium sp. (strain SY8519)		2014-Nov-05	2598	-1263461042	B
AGARV	Agathobacter rectalis (strain ATCC 33656 / DSM 3377 / JCM 17463 / KCTC 5835 / VPI 0990)		2010-May-24	3542	-1140930106	B
LACSW	Lacrimispora saccharolytica (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1)		2013-Jan-10	4132	-506242731	B
ROSHA	Roseburia hominis (strain DSM 16839 / JCM 17582 / NCIMB 14029 / A2-183)		2016-Sep-14	3349	-315051426	B
ANAHA	Anaerostipes hadrus		2019-Dec-12	2771	-158877100	B

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