Information of genome o__Methanomicrobiales

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Ancestral genome of o__Methanomicrobiales

with 8 descendant species and 4161 (2819 well supported) ancestral genes (HOGs).

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Common name:	o__Methanomicrobiales
Taxonomic identifier:	-6311844
Number of ancestral genes:	4161 (all HOGs) 2819 (well supported HOGs ?)
Number of ancestral genes included in ancestral contigs:	2256
Number of descendant extant species:	8

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Code	Scientific Name	Common Name	Last Update	# of Sequences	Taxon Id	D.
METP4	Methanolacinia petrolearia (strain DSM 11571 / OCM 486 / SEBR 4847)		2011-May-30	2779	-2018184989	A
METLZ	Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z)		2007-May-03	1739	-1589367159	A
METPE	Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c)		2009-Jun-21	2655	-1078876135	A
METHJ	Methanospirillum hungatei JF-1 (strain ATCC 27890 / DSM 864 / NBRC 100397 / JF-1)		2014-Mar-24	3095	-986973048	A
METBM	Methanoculleus bourgensis (strain ATCC 43281 / DSM 3045 / OCM 15 / MS2)		2014-Oct-26	2575	-1153919341	A
METMJ	Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1)		2007-May-03	2474	-699904764	A
METB6	Methanoregula boonei (strain DSM 21154 / JCM 14090 / 6A8)		2007-Oct-25	2450	-351281954	A
METFS	Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP)		2014-Oct-26	2815	-31634776	A

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