Information of genome p__Armatimonadota

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Ancestral genome of p__Armatimonadota

with 8 descendant species and 9358 (3882 well supported) ancestral genes (HOGs).

‹

Common name:	p__Armatimonadota
Taxonomic identifier:	-832700815
Number of ancestral genes:	9358 (all HOGs) 3882 (well supported HOGs ?)
Number of ancestral genes included in ancestral contigs:	4629
Number of descendant extant species:	8

Loading, please wait...

Code	Scientific Name	Common Name	Last Update	# of Sequences	Taxon Id	D.
U02AM	Armatimonadetes bacterium NC_groundwater_1868_Pr3_B-0.1um_69_17		2023-Feb-07	4933	-2123700578	B
FIMGI	Fimbriimonas ginsengisoli		2022-Nov-08	4820	-2010605936	B
CHTCT	Chthonomonas calidirosea (strain DSM 23976 / ICMP 18418 / T49)		2019-Jan-06	2811	-1896112810	B
UC003	Abitibacteriaceae bacterium CP_BM_RX_R8_36		2023-Mar-30	5295	-1817599532	B
U01AM	Armatimonadetes bacterium AS09scLD_344		2023-Feb-07	3916	-433106328	B
U03AM	Armatimonadetes bacterium Ch1		2023-Feb-07	4400	-201822911	B
UC023	Abditibacteriota bacterium RGIG7931		2023-Mar-30	2182	-118553886	B
ARMRO	Armatimonas rosea		2022-Nov-27	5897	-112355246	B

Showing 1 to 8 of 8 rows