Information of genome p__Nitrospirota

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Ancestral genome of p__Nitrospirota

with 6 descendant species and 6459 (2227 well supported) ancestral genes (HOGs).

‹

Common name:	p__Nitrospirota
Taxonomic identifier:	-1077723063
Number of ancestral genes:	6459 (all HOGs) 2227 (well supported HOGs ?)
Number of ancestral genes included in ancestral contigs:	4245
Number of descendant extant species:	6

Loading, please wait...

Code	Scientific Name	Common Name	Last Update	# of Sequences	Taxon Id	D.
THEYD	Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87)		2010-Feb-24	1982	-2128769503	B
U03NT	Nitrospirae bacterium NC_groundwater_1776_Pr3_B-0.1um_70_102		2023-Feb-07	2475	-1708457313	B
U05NT	Nitrospirae bacterium NC_groundwater_1760_Pr3_B-0.1um_42_52		2023-Feb-07	2876	-1524826219	B
NITMO	Nitrospira moscoviensis		2017-Nov-08	4790	-1473268309	B
U02NT	Nitrospirae bacterium NC_groundwater_891_Pr1_S2p5_65_34		2023-Feb-07	2651	-1009233869	B
U04NT	Nitrospirae bacterium NC_groundwater_1774_Pr3_B-0.1um_61_24		2023-Feb-07	2763	-462244268	B

Showing 1 to 6 of 6 rows