Related genomes of genome ACHLI based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

ACHLI - Acholeplasma laidlawii (strain PG-8A)

Proteome version: 18-MAR-2008 (Rel. 88, Last updated, Version 2) with 1380 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	NIACI	Niallia circulans	476
2	BACC1	Bacillus cereus (strain ATCC 10987 / NRS 248)	468
3	BACC3	Bacillus cereus (strain 03BB102)	466
4	BACC7	Bacillus cereus (strain AH187)	466
5	BACC2	Bacillus cereus (strain G9842)	464
6	BACMK	Bacillus mycoides (strain KBAB4)	462
7	BACC4	Bacillus cereus (strain B4264)	462
8	BACAC	Bacillus anthracis (strain CDC 684 / NRRL 3495)	460
9	BACCZ	Bacillus cereus (strain ZK / E33L)	460
10	CARS1	Carnobacterium sp. (strain 17-4)	460

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	14
2	EDHAE	Edhazardia aedis (strain USNM 41457)	15
3	RALSL	Ralstonia solanacearum	16
4	VITCO	Vittaforma corneae (strain ATCC 50505)	17
5	ENTBH	Enterocytozoon bieneusi (strain H348)	18
6	TRYCI	Trypanosoma congolense (strain IL3000)	21
7	TRAHO	Trachipleistophora hominis	22
8	NEMP3	Nematocida parisii (strain ERTm3)	22
9	NANGC	Nannochloropsis gaditana (strain CCMP526)	23
10	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	24