Related genomes of genome ACIC5 based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

ACIC5 - Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / BCRC 80197 / JCM 7670 / NBRC 15755 / NCIMB 13165 / 161)

Proteome version: 16-JUN-2009 (Rel. 107, Last updated, Version 1) with 3363 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TERSS	Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4)	1545
2	GRATM	Granulicella tundricola (strain ATCC BAA-1859 / DSM 23138 / MP5ACTX9)	1544
3	GRAMM	Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8)	1542
4	TERRK	Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63)	1471
5	KORVE	Koribacter versatilis (strain Ellin345)	1398
6	SOLUE	Solibacter usitatus (strain Ellin6076)	1283
7	LUTPR	Luteitalea pratensis	955
8	ANASK	Anaeromyxobacter sp. (strain K)	800
9	BURCH	Burkholderia cenocepacia (strain HI2424)	797
10	BURCJ	Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610)	795

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	11
2	VITCO	Vittaforma corneae (strain ATCC 50505)	15
3	EDHAE	Edhazardia aedis (strain USNM 41457)	22
4	NEMP3	Nematocida parisii (strain ERTm3)	22
5	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	24
6	TRAHO	Trachipleistophora hominis	24
7	TRYCI	Trypanosoma congolense (strain IL3000)	28
8	SPRLO	Spraguea lophii (strain 42_110)	29
9	VAVCU	Vavraia culicis (isolate floridensis)	29
10	NOSCE	Nosema ceranae (strain BRL01)	29