Related genomes of genome ASPPA based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

ASPPA - Aspergillus parasiticus

Proteome version: Ensembl Fungi 56; Asppar1; GCA_009176385.1 with 13752 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ASPFN	Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167)	8722
2	ASPOR	Aspergillus oryzae (strain ATCC 42149 / RIB 40)	8259
3	PETAA	Petromyces alliaceus	8148
4	ASPBC	Aspergillus brasiliensis (strain CBS 101740 / IMI 381727 / IBT 21946)	7392
5	ASPTC	Aspergillus tubingensis (strain CBS 134.48)	7232
6	ASPCI	Aspergillus calidoustus	7215
7	ASPA1	Aspergillus aculeatus (strain ATCC 16872 / CBS 172.66 / WB 5094)	7065
8	ASPV1	Aspergillus violaceofuscus (strain CBS 115571)	7061
9	ASPAC	Aspergillus aculeatus	6989
10	PENCH	Penicillium chrysogenum	6787

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UC116	Patescibacteria group bacterium E44_bin74	26
2	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	40
3	ZINIC	Zinderia insecticola (strain CARI)	40
4	UC179	candidate division Kazan bacterium GW2011_GWA1_50_15 none	42
5	MYCHA	Mycoplasma haemolamae (strain Purdue)	42
6	UC105	Patescibacteria group bacterium Baikal-deep-G193	44
7	UC087	Candidatus Pacebacteria bacterium LF-bin-483	46
8	UC148	bacterium (Candidatus Torokbacteria) CG_4_10_14_0_2_um_filter_35_8	49
9	MYCS3	Mycoplasma suis (strain KI_3806)	49
10	MYCCR	Mycoplasma conjunctivae (strain ATCC 25834 / HRC/581 / NCTC 10147)	51