Related genomes of genome BACCQ based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

BACCQ - Bacillus cereus (strain Q1)

Proteome version: 02-MAR-2010 (Rel. 118, Last updated, Version 13) with 5458 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	BACC7	Bacillus cereus (strain AH187)	4690
2	BACCZ	Bacillus cereus (strain ZK / E33L)	4344
3	BACT0	Bacillus thuringiensis subsp. finitimus (strain YBT-020)	4341
4	BACC0	Bacillus cereus (strain AH820)	4313
5	BACC3	Bacillus cereus (strain 03BB102)	4285
6	BACAI	Bacillus cereus var. anthracis (strain CI)	4272
7	BACHK	Bacillus thuringiensis subsp. konkukian (strain 97-27)	4245
8	BACC1	Bacillus cereus (strain ATCC 10987 / NRS 248)	4233
9	BACAC	Bacillus anthracis (strain CDC 684 / NRRL 3495)	4225
10	BACC4	Bacillus cereus (strain B4264)	4159

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	VITCO	Vittaforma corneae (strain ATCC 50505)	21
2	ENTBH	Enterocytozoon bieneusi (strain H348)	23
3	EDHAE	Edhazardia aedis (strain USNM 41457)	24
4	TRAHO	Trachipleistophora hominis	28
5	NEMP3	Nematocida parisii (strain ERTm3)	30
6	TRYCI	Trypanosoma congolense (strain IL3000)	34
7	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	35
8	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	37
9	NOSCE	Nosema ceranae (strain BRL01)	37
10	VAVCU	Vavraia culicis (isolate floridensis)	37