Related genomes of genome CALAY based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

CALAY - Caldithrix abyssi

Proteome version: Refseq; ASM188681v1; GCA_001886815.1; 11-SEP-2019 with 4214 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UC107	Calditrichaeota bacterium CLD2	1203
2	UC142	bacterium BMS3Bbin03	1148
3	IGNAJ	Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16)	1084
4	MELRP	Melioribacter roseus (strain JCM 17771 / P3M-2)	1007
5	UC177	Candidatus Kryptobacter tengchongensis JGI-3	919
6	UC033	bacterium Zod_Metabat.1116	911
7	UC068	Ignavibacteriales bacterium NC_groundwater_1911_Pr3_S2p5_40_15	895
8	UC092	Bacteroidetes bacterium MAG_11	888
9	UC013	Candidatus Marinimicrobia bacterium SI036_bin79	877
10	UC093	bacterium MAG_59	862

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	17
2	VITCO	Vittaforma corneae (strain ATCC 50505)	20
3	EDHAE	Edhazardia aedis (strain USNM 41457)	23
4	TRYCI	Trypanosoma congolense (strain IL3000)	25
5	TRAHO	Trachipleistophora hominis	26
6	NEMP3	Nematocida parisii (strain ERTm3)	29
7	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	31
8	SPRLO	Spraguea lophii (strain 42_110)	32
9	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	33
10	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	33