Related genomes of genome CALLD based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

CALLD - Caldisphaera lagunensis (strain DSM 15908 / JCM 11604 / ANMR 0165 / IC-154)

Proteome version: 23-JUL-2013 (Rel. 117, Last updated, Version 2) with 1477 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ACIS3	Acidilobus saccharovorans (strain DSM 16705 / JCM 18335 / VKM B-2471 / 345-15)	970
2	SULIK	Sulfolobus islandicus (strain M.16.4 / Kamchatka #3)	722
3	SULIH	Sulfolobus islandicus (strain HVE10/4)	722
4	SULIM	Sulfolobus islandicus (strain M.14.25 / Kamchatka #1)	719
5	SULIA	Sulfolobus islandicus (strain M.16.27)	716
6	SULID	Sulfolobus islandicus (strain L.D.8.5 / Lassen #2)	716
7	SULIN	Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2)	711
8	SULIL	Sulfolobus islandicus (strain L.S.2.15 / Lassen #1)	711
9	SULIR	Sulfolobus islandicus (strain REY15A)	709
10	SACS2	Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)	706

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UC087	Candidatus Pacebacteria bacterium LF-bin-483	19
2	UC116	Patescibacteria group bacterium E44_bin74	19
3	TRYCI	Trypanosoma congolense (strain IL3000)	22
4	RALSL	Ralstonia solanacearum	23
5	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	25
6	UC179	candidate division Kazan bacterium GW2011_GWA1_50_15 none	26
7	UC105	Patescibacteria group bacterium Baikal-deep-G193	27
8	AYWBP	Aster yellows witches'-broom phytoplasma (strain AYWB)	27
9	PHYMT	Phytoplasma mali (strain AT)	27
10	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	27