Related genomes of genome CALOO based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

CALOO - Caldicellulosiruptor obsidiansis (strain ATCC BAA-2073 / strain OB47)

Proteome version: 10-OCT-2011 (Rel. 110, Last updated, Version 3) with 2184 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	CALBD	Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320)	1847
2	CALK2	Caldicellulosiruptor kronotskyensis (strain DSM 18902 / VKM B-2412 / 2002)	1799
3	CALH1	Caldicellulosiruptor hydrothermalis (strain DSM 18901 / VKM B-2411 / 108)	1722
4	CALOW	Caldicellulosiruptor owensensis (strain ATCC 700167 / DSM 13100 / OL)	1722
5	CALKI	Caldicellulosiruptor kristjanssonii (strain ATCC 700853 / DSM 12137 / I77R1B)	1718
6	CALS8	Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T 6331)	1657
7	THETC	Thermoanaerobacterium thermosaccharolyticum (strain ATCC 7956 / DSM 571 / NCIMB 9385 / NCA 3814 / NCTC 13789 / WDCM 00135 / 2032)	998
8	THESW	Thermoanaerobacterium saccharolyticum (strain DSM 8691 / JW/SL-YS485)	995
9	THEXL	Thermoanaerobacterium xylanolyticum (strain ATCC 49914 / DSM 7097 / LX-11)	993
10	THEIA	Thermoanaerobacter italicus (strain DSM 9252 / Ab9)	972

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	13
2	EDHAE	Edhazardia aedis (strain USNM 41457)	14
3	TRYCI	Trypanosoma congolense (strain IL3000)	15
4	TRAHO	Trachipleistophora hominis	15
5	VITCO	Vittaforma corneae (strain ATCC 50505)	15
6	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	17
7	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	19
8	NEMP3	Nematocida parisii (strain ERTm3)	20
9	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	22
10	NOSCE	Nosema ceranae (strain BRL01)	22