Related genomes of genome CAPHI based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

CAPHI - Capra hircus

Proteome version: Ensembl 97; ARS1; GCA_001704415.1 with 21361 genes / 32873 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	BOVIN	Bos taurus	16652
2	PIGXX	Sus scrofa	15721
3	MOUSE	Mus musculus	15637
4	HUMAN	Homo sapiens	15593
5	BOBOX	Bos indicus x Bos taurus	15445
6	CERSS	Ceratotherium simum simum	15314
7	PANTR	Pan troglodytes	15240
8	PANLE	Panthera leo	15215
9	PONAB	Pongo abelii	15078
10	RATNO	Rattus norvegicus	15065

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	31
2	UC116	Patescibacteria group bacterium E44_bin74	42
3	ZINIC	Zinderia insecticola (strain CARI)	42
4	MYCHA	Mycoplasma haemolamae (strain Purdue)	48
5	UC105	Patescibacteria group bacterium Baikal-deep-G193	49
6	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	50
7	UC087	Candidatus Pacebacteria bacterium LF-bin-483	50
8	MYCS3	Mycoplasma suis (strain KI_3806)	51
9	MYCSL	Mycoplasma suis (strain Illinois)	54
10	UC008	Patescibacteria group bacterium Modern_marine.mb.211	57