Related genomes of genome CAPTE based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

CAPTE - Capitella teleta

Proteome version: Ensembl Metazoa 27; GCA_000328365.1; 2-JUN-2015 with 31325 proteins.

‹

Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	CAPI1	Capitella sp. 1	31286
2	BULTR	Bulinus truncatus	6738
3	LOTGI	Lottia gigantea	6733
4	APLCA	Aplysia californica	6236
5	MYAAR	Mya arenaria	6013
6	CRAGI	Crassostrea gigas	5960
7	SALTR	Salmo trutta	5913
8	MERMC	Mercenaria mercenaria	5892
9	CYPCA	Cyprinus carpio carpio	5866
10	PECMA	Pecten maximus	5812

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ZINIC	Zinderia insecticola (strain CARI)	42
2	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	43
3	MYCHA	Mycoplasma haemolamae (strain Purdue)	46
4	MYCS3	Mycoplasma suis (strain KI_3806)	51
5	UC116	Patescibacteria group bacterium E44_bin74	52
6	MYCSL	Mycoplasma suis (strain Illinois)	54
7	MYCHN	Mycoplasma haemocanis (strain Illinois)	56
8	UC087	Candidatus Pacebacteria bacterium LF-bin-483	57
9	MYCHI	Mycoplasma haemofelis (strain Ohio2)	57
10	MYCHL	Mycoplasma haemofelis (strain Langford 1)	58