Related genomes of genome CAVFA based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

CAVFA - Cavenderia fasciculata (strain SH3)

Proteome version: Ensembl Protists 42; DFas_2.0; GCA_000203815.1 with 12165 proteins.

‹

Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	DICDI	Dictyostelium discoideum	4346
2	TIELA	Tieghemostelium lacteum	4178
3	DICPU	Dictyostelium purpureum	4043
4	POLPP	Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500)	3995
5	WHEAT	Triticum aestivum	1781
6	SALTR	Salmo trutta	1752
7	CYPCA	Cyprinus carpio carpio	1745
8	SALSA	Salmo salar	1718
9	BRANA	Brassica napus	1692
10	GOSHI	Gossypium hirsutum	1640

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	16
2	ZINIC	Zinderia insecticola (strain CARI)	20
3	UC116	Patescibacteria group bacterium E44_bin74	22
4	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	28
5	MYCHA	Mycoplasma haemolamae (strain Purdue)	29
6	UC179	candidate division Kazan bacterium GW2011_GWA1_50_15 none	30
7	MYCS3	Mycoplasma suis (strain KI_3806)	30
8	MYCSL	Mycoplasma suis (strain Illinois)	31
9	UC105	Patescibacteria group bacterium Baikal-deep-G193	33
10	UC087	Candidatus Pacebacteria bacterium LF-bin-483	34