Related genomes of genome CHTCT based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

CHTCT - Chthonomonas calidirosea (strain DSM 23976 / ICMP 18418 / T49)

Proteome version: Ensembl Bacteria 41; T49 with 2811 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ARMRO	Armatimonas rosea	1050
2	UC003	Abitibacteriaceae bacterium CP_BM_RX_R8_36	934
3	FIMGI	Fimbriimonas ginsengisoli	889
4	U01AM	Armatimonadetes bacterium AS09scLD_344	804
5	U02AM	Armatimonadetes bacterium NC_groundwater_1868_Pr3_B-0.1um_69_17	798
6	SOLUE	Solibacter usitatus (strain Ellin6076)	736
7	U03AM	Armatimonadetes bacterium Ch1	696
8	KTERU	Ktedonosporobacter rubrisoli	664
9	CHLSY	Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl)	663
10	CHLAA	Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)	662

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYCI	Trypanosoma congolense (strain IL3000)	13
2	VITCO	Vittaforma corneae (strain ATCC 50505)	17
3	EDHAE	Edhazardia aedis (strain USNM 41457)	19
4	ENTBH	Enterocytozoon bieneusi (strain H348)	19
5	NEMP3	Nematocida parisii (strain ERTm3)	23
6	TRAHO	Trachipleistophora hominis	24
7	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	24
8	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	27
9	MEGSC	Megaselia scalaris	28
10	SPRLO	Spraguea lophii (strain 42_110)	28