Related genomes of genome CLOP1 based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

CLOP1 - Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 / NCIMB 6125 / NCTC 8237 / Type A)

Proteome version: 03-AUG-2006 (Rel. 88, Last updated, Version 2) with 2873 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	CLOPE	Clostridium perfringens (strain 13 / Type A)	2329
2	CLOPS	Clostridium perfringens (strain SM101 / Type A)	2091
3	CLOBB	Clostridium botulinum (strain Eklund 17B / Type B)	1408
4	CLOBA	Clostridium botulinum (strain Alaska E43 / Type E3)	1394
5	CLOB8	Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052)	1389
6	CLOBL	Clostridium botulinum (strain Langeland / NCTC 10281 / Type F)	1284
7	CLOBK	Clostridium botulinum (strain Okra / Type B1)	1278
8	CLOBH	Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A)	1275
9	CLOBJ	Clostridium botulinum (strain Kyoto / Type A2)	1274
10	CLOB6	Clostridium botulinum (strain 657 / Type Ba4)	1273

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYCI	Trypanosoma congolense (strain IL3000)	19
2	ENTBH	Enterocytozoon bieneusi (strain H348)	20
3	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	20
4	VITCO	Vittaforma corneae (strain ATCC 50505)	20
5	EDHAE	Edhazardia aedis (strain USNM 41457)	24
6	NEMP3	Nematocida parisii (strain ERTm3)	25
7	TRAHO	Trachipleistophora hominis	29
8	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	29
9	NOSCE	Nosema ceranae (strain BRL01)	31
10	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	31