Related genomes of genome DESAP based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

DESAP - Desulforudis audaxviator (strain MP104C)

Proteome version: 01-JUL-2008 (Rel. 93, Last updated, Version 2) with 2135 proteins.

‹

Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	DESK7	Desulfofundulus kuznetsovii (strain DSM 6115 / VKM B-1805 / 17)	1148
2	DESRL	Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIMB 8452 / DL)	1047
3	PELTS	Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI)	1018
4	DESCC	Desulfotomaculum nigrificans (strain DSM 14880 / VKM B-2319 / CO-1-SRB)	1013
5	DESRM	Desulfotomaculum reducens (strain MI-1)	1007
6	DESAS	Desulfofarcimen acetoxidans (strain ATCC 49208 / DSM 771 / KCTC 5769 / VKM B-1644 / 5575)	1004
7	THEPS	Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 26808 / PB)	955
8	THEPJ	Thermincola potens (strain JR)	951
9	THEFR	Thermanaerosceptrum fracticalcis	949
10	MOOTA	Moorella thermoacetica (strain ATCC 39073 / JCM 9320)	932

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	14
2	TRAHO	Trachipleistophora hominis	15
3	VITCO	Vittaforma corneae (strain ATCC 50505)	16
4	TRYCI	Trypanosoma congolense (strain IL3000)	17
5	EDHAE	Edhazardia aedis (strain USNM 41457)	17
6	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	18
7	VAVCU	Vavraia culicis (isolate floridensis)	21
8	NEMP3	Nematocida parisii (strain ERTm3)	22
9	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	23
10	MEGSC	Megaselia scalaris	23