Related genomes of genome DESAT based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

DESAT - Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2)

Proteome version: 08-MAR-2011 (Rel. 129, Last updated, Version 4) with 2595 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	DESSD	Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1)	1141
2	DESPD	Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / VKM B-1956 / 1pr3)	1031
3	DESAA	Desulfatibacillum alkenivorans (strain AK-01)	935
4	DESAL	Desulfatibacillum aliphaticivorans	931
5	DESTT	Desulfobacula toluolica (strain DSM 7467 / Tol2)	908
6	DISTH	Dissulfurirhabdus thermomarina	902
7	DESAH	Desulforapulum autotrophicum (strain ATCC 43914 / DSM 3382 / VKM B-1955 / HRM2)	899
8	DESPS	Desulfotalea psychrophila (strain LSv54 / DSM 12343)	896
9	U19DE	Deltaproteobacteria bacterium NC_groundwater_1540_Pr4_S-0.65um_55_10	858
10	DESBD	Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378 / X)	857

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYCI	Trypanosoma congolense (strain IL3000)	13
2	ENTBH	Enterocytozoon bieneusi (strain H348)	16
3	VITCO	Vittaforma corneae (strain ATCC 50505)	18
4	EDHAE	Edhazardia aedis (strain USNM 41457)	23
5	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	26
6	MEGSC	Megaselia scalaris	26
7	TRAHO	Trachipleistophora hominis	27
8	NEMP3	Nematocida parisii (strain ERTm3)	27
9	NOSB1	Nosema bombycis (strain CQ1 / CVCC 102059)	29
10	NANEQ	Nanoarchaeum equitans (strain Kin4-M)	29