Related genomes of genome EIMMA based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

EIMMA - Eimeria maxima

Proteome version: Ensembl Protists 30; GCA_000499605.1; 26-OCT-2015 with 6057 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	EIMAC	Eimeria acervulina	2641
2	EIMTE	Eimeria tenella	1716
3	HAMHA	Hammondia hammondi	943
4	TOXGV	Toxoplasma gondii (strain ATCC 50861 / VEG)	920
5	TOXGO	Toxoplasma gondii	899
6	NEOCL	Neospora caninum (strain Liverpool)	867
7	VITBC	Vitrella brassicaformis (strain CCMP3155)	453
8	WHEAT	Triticum aestivum	416
9	BRANA	Brassica napus	403
10	PLAF7	Plasmodium falciparum (isolate 3D7)	389

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	3
2	UC116	Patescibacteria group bacterium E44_bin74	5
3	ZINIC	Zinderia insecticola (strain CARI)	7
4	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	9
5	UC184	candidate division WWE3 bacterium RAAC2_WWE3_1	9
6	MYCSL	Mycoplasma suis (strain Illinois)	10
7	SULMC	Sulcia muelleri (strain CARI)	10
8	UC179	candidate division Kazan bacterium GW2011_GWA1_50_15 none	10
9	MYCHA	Mycoplasma haemolamae (strain Purdue)	11
10	MYCS3	Mycoplasma suis (strain KI_3806)	11