Related genomes of genome EMIHU based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

EMIHU - Emiliania huxleyi CCMP1516

Proteome version: v1.0 with 31454 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	DIALT	Diacronema lutheri	2574
2	WHEAT	Triticum aestivum	2113
3	GUITH	Guillardia theta	2051
4	GUITC	Guillardia theta (strain CCMP2712)	2035
5	BRANA	Brassica napus	2010
6	GOSHI	Gossypium hirsutum	1893
7	POLGL	Polarella glacialis	1805
8	AURAN	Aureococcus anophagefferens	1794
9	TOBAC	Nicotiana tabacum	1776
10	SOYBN	Glycine max	1748

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	MYCHA	Mycoplasma haemolamae (strain Purdue)	28
2	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	30
3	MYCSL	Mycoplasma suis (strain Illinois)	33
4	MYCS3	Mycoplasma suis (strain KI_3806)	33
5	ZINIC	Zinderia insecticola (strain CARI)	34
6	MYCHN	Mycoplasma haemocanis (strain Illinois)	35
7	RALSL	Ralstonia solanacearum	36
8	MYCHI	Mycoplasma haemofelis (strain Ohio2)	38
9	MYCHL	Mycoplasma haemofelis (strain Langford 1)	38
10	UC087	Candidatus Pacebacteria bacterium LF-bin-483	40