Related genomes of genome ERWPE based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

ERWPE - Erwinia pyrifoliae (strain DSM 12162 / Ep1/96)

Proteome version: 22-JUN-2010 (Rel. 105, Last updated, Version 9) with 3673 proteins.

‹

Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ERWP6	Erwinia pyrifoliae (strain DSM 12163 / CIP 106111 / Ep16/96)	3379
2	ERWSE	Erwinia sp. (strain Ejp617)	3045
3	ERWAE	Erwinia amylovora (strain ATCC 49946 / CCPPB 0273 / Ea273 / 27-3)	2762
4	ERWAC	Erwinia amylovora (strain CFBP1430)	2729
5	ERWT9	Erwinia tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / NCPPB 4357 / Et1/99)	2641
6	ERWBE	Erwinia billingiae (strain Eb661)	2374
7	PANSA	Pantoea sp. (strain At-9b)	2319
8	PANAM	Pantoea ananatis (strain LMG 20103)	2279
9	PANVC	Pantoea vagans (strain C9-1)	2278
10	SERP5	Serratia proteamaculans (strain 568)	2196

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	21
2	VITCO	Vittaforma corneae (strain ATCC 50505)	22
3	EDHAE	Edhazardia aedis (strain USNM 41457)	24
4	TRAHO	Trachipleistophora hominis	26
5	TRYCI	Trypanosoma congolense (strain IL3000)	30
6	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	31
7	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	31
8	NEMP3	Nematocida parisii (strain ERTm3)	34
9	VAVCU	Vavraia culicis (isolate floridensis)	34
10	NOSCE	Nosema ceranae (strain BRL01)	35