Related genomes of genome FOMPI based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

FOMPI - Fomitopsis pinicola (strain FP-58527)

Proteome version: JGI; Fompi3; 05-JUL-2012 with 13812 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	WOLCO	Wolfiporia cocos (strain MD-104)	6213
2	TRAVS	Trametes versicolor (strain FP-101664)	6205
3	DICSQ	Dichomitus squalens (strain LYAD-421)	5648
4	ARMGA	Armillaria gallica	5624
5	GLOTR	Gloeophyllum trabeum	5548
6	GLOTA	Gloeophyllum trabeum (strain ATCC 11539 / FP-39264 / Madison 617)	5538
7	PHLGI	Phlebiopsis gigantea	5286
8	HYPSF	Hypholoma sublateritium (strain FD-334 SS-4)	5132
9	STEHR	Stereum hirsutum (strain FP-91666)	5063
10	ARMOS	Armillaria ostoyae	4923

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	24
2	UC116	Patescibacteria group bacterium E44_bin74	36
3	ZINIC	Zinderia insecticola (strain CARI)	40
4	UC087	Candidatus Pacebacteria bacterium LF-bin-483	42
5	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	42
6	UC179	candidate division Kazan bacterium GW2011_GWA1_50_15 none	43
7	MYCHA	Mycoplasma haemolamae (strain Purdue)	43
8	MYCS3	Mycoplasma suis (strain KI_3806)	47
9	UC105	Patescibacteria group bacterium Baikal-deep-G193	47
10	MYCSL	Mycoplasma suis (strain Illinois)	49