Related genomes of genome GRAMM based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

GRAMM - Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8)

Proteome version: 18-JUL-2013 (Rel. 117, Last updated, Version 2) with 4803 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	GRATM	Granulicella tundricola (strain ATCC BAA-1859 / DSM 23138 / MP5ACTX9)	2192
2	TERSS	Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4)	2158
3	TERRK	Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63)	1897
4	SOLUE	Solibacter usitatus (strain Ellin6076)	1564
5	ACIC5	Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / BCRC 80197 / JCM 7670 / NBRC 15755 / NCIMB 13165 / 161)	1542
6	KORVE	Koribacter versatilis (strain Ellin345)	1488
7	LUTPR	Luteitalea pratensis	1069
8	BURCH	Burkholderia cenocepacia (strain HI2424)	1012
9	BURCC	Burkholderia cenocepacia (strain MC0-3)	1008
10	BURL3	Burkholderia lata (strain ATCC 17760 / DSM 23089 / LMG 22485 / NCIMB 9086 / R18194 / 383)	996

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	16
2	VITCO	Vittaforma corneae (strain ATCC 50505)	17
3	EDHAE	Edhazardia aedis (strain USNM 41457)	21
4	TRAHO	Trachipleistophora hominis	23
5	NEMP3	Nematocida parisii (strain ERTm3)	25
6	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	25
7	SPRLO	Spraguea lophii (strain 42_110)	26
8	NANEQ	Nanoarchaeum equitans (strain Kin4-M)	27
9	NOSCE	Nosema ceranae (strain BRL01)	28
10	VAVCU	Vavraia culicis (isolate floridensis)	28