Related genomes of genome LACCD based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

LACCD - Lacticaseibacillus casei (strain BD-II)

Proteome version: 21-JUN-2011 (Rel. 109, Last updated, Version 2) with 3163 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	LACP3	Lacticaseibacillus paracasei (strain ATCC 334 / BCRC 17002 / CCUG 31169 / CIP 107868 / KCTC 3260 / NRRL B-441)	2272
2	LACRG	Lacticaseibacillus rhamnosus (strain ATCC 53103 / LMG 18243 / GG)	2002
3	LACRL	Lacticaseibacillus rhamnosus (strain Lc 705)	1995
4	LACPL	Lactiplantibacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1)	1297
5	LACPJ	Lactiplantibacillus plantarum (strain JDM1)	1276
6	LACPS	Lactiplantibacillus plantarum (strain ST-III)	1273
7	ENTF6	Enterococcus faecalis (strain 62)	1164
8	ENTFA	Enterococcus faecalis (strain ATCC 700802 / V583)	1149
9	ENTFO	Enterococcus faecalis (strain ATCC 47077 / OG1RF)	1137
10	ENTFD	Enterococcus faecium (strain ATCC BAA-472 / TX0016 / DO)	1107

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	VITCO	Vittaforma corneae (strain ATCC 50505)	14
2	ENTBH	Enterocytozoon bieneusi (strain H348)	15
3	TRYCI	Trypanosoma congolense (strain IL3000)	19
4	EDHAE	Edhazardia aedis (strain USNM 41457)	19
5	TRAHO	Trachipleistophora hominis	19
6	NEMP3	Nematocida parisii (strain ERTm3)	21
7	VAVCU	Vavraia culicis (isolate floridensis)	24
8	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	25
9	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	25
10	NOSCE	Nosema ceranae (strain BRL01)	26