Related genomes of genome LEIDB based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

LEIDB - Leishmania donovani (strain BPK282A1)

Proteome version: 27-FEB-2015 (Rel. 123, Last updated, Version 4) with 7950 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	LEIIN	Leishmania infantum	7322
2	LEIMA	Leishmania major strain Friedlin	7225
3	LEIMU	Leishmania mexicana (strain MHOM/GT/2001/U1103)	7218
4	LEPPY	Leptomonas pyrrhocoris	6677
5	LEIBR	Leishmania braziliensis	6670
6	LEPSE	Leptomonas seymouri	6473
7	TRYCC	Trypanosoma cruzi (strain CL Brener)	4525
8	TRYRA	Trypanosoma rangeli	4126
9	TRYVY	Trypanosoma vivax (strain Y486)	3289
10	TRYB2	Trypanosoma brucei brucei (strain 927/4 GUTat10.1)	3207

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	10
2	UC116	Patescibacteria group bacterium E44_bin74	16
3	ZINIC	Zinderia insecticola (strain CARI)	23
4	UC179	candidate division Kazan bacterium GW2011_GWA1_50_15 none	26
5	UC087	Candidatus Pacebacteria bacterium LF-bin-483	27
6	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	28
7	MYCHA	Mycoplasma haemolamae (strain Purdue)	29
8	UC077	Candidatus Microgenomates bacterium NC_groundwater_396_Ag_B-0.1um_42_16	29
9	MYCS3	Mycoplasma suis (strain KI_3806)	30
10	UC184	candidate division WWE3 bacterium RAAC2_WWE3_1	30