Related genomes of genome MACNE based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

MACNE - Macaca nemestrina

Proteome version: Ensembl 41; Mnem_1.0 with 21060 genes / 46238 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	MACFA	Macaca fascicularis	18308
2	CERAT	Cercocebus atys	17719
3	PANTR	Pan troglodytes	16914
4	RHIRO	Rhinopithecus roxellana	16779
5	MANLE	Mandrillus leucophaeus	16765
6	COLAP	Colobus angolensis palliatus	16353
7	GORGO	Gorilla gorilla gorilla	16263
8	PANPA	Pan paniscus	16216
9	RHIBE	Rhinopithecus bieti	16161
10	HUMAN	Homo sapiens	16140

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	31
2	UC116	Patescibacteria group bacterium E44_bin74	38
3	ZINIC	Zinderia insecticola (strain CARI)	39
4	UC105	Patescibacteria group bacterium Baikal-deep-G193	43
5	MYCHA	Mycoplasma haemolamae (strain Purdue)	45
6	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	47
7	UC087	Candidatus Pacebacteria bacterium LF-bin-483	47
8	MYCS3	Mycoplasma suis (strain KI_3806)	50
9	MYCSL	Mycoplasma suis (strain Illinois)	53
10	UC179	candidate division Kazan bacterium GW2011_GWA1_50_15 none	56