Related genomes of genome METFA based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

METFA - Methanocaldococcus fervens (strain DSM 4213 / JCM 15782 / AG86)

Proteome version: 03-NOV-2009 (Rel. 113, Last updated, Version 1) with 1546 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	METSF	Methanocaldococcus sp. (strain FS406-22)	1318
2	METJA	Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)	1290
3	METVM	Methanocaldococcus vulcanius (strain ATCC 700851 / DSM 12094 / M7)	1256
4	METIK	Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5)	1175
5	METIM	Methanocaldococcus infernus (strain DSM 11812 / JCM 15783 / ME)	1123
6	METOI	Methanothermococcus okinawensis (strain DSM 14208 / JCM 11175 / IH1)	1113
7	METMI	Methanococcus maripaludis X1	1093
8	METMP	Methanococcus maripaludis (strain S2 / LL)	1092
9	METM6	Methanococcus maripaludis (strain C6 / ATCC BAA-1332)	1090
10	METM7	Methanococcus maripaludis (strain C7 / ATCC BAA-1331)	1085

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYCI	Trypanosoma congolense (strain IL3000)	17
2	UC116	Patescibacteria group bacterium E44_bin74	21
3	UC105	Patescibacteria group bacterium Baikal-deep-G193	22
4	RALSL	Ralstonia solanacearum	22
5	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	23
6	UC087	Candidatus Pacebacteria bacterium LF-bin-483	24
7	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	24
8	MEGSC	Megaselia scalaris	25
9	ZINIC	Zinderia insecticola (strain CARI)	27
10	MYCSL	Mycoplasma suis (strain Illinois)	28