Related genomes of genome MOREP based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

MOREP - Moranella endobia (strain PCIT)

Proteome version: 31-AUG-2011 (Rel. 109, Last updated, Version 2) with 405 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	PANSA	Pantoea sp. (strain At-9b)	370
2	PECAS	Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)	369
3	YERPY	Yersinia pseudotuberculosis serotype O:3 (strain YPIII)	368
4	YERPS	Yersinia pseudotuberculosis serotype I (strain IP32953)	368
5	RAHSY	Rahnella sp. (strain Y9602)	368
6	CROTZ	Cronobacter turicensis (strain DSM 18703 / CCUG 55852 / LMG 23827 / z3032)	367
7	YERPE	Yersinia pestis CO92	367
8	SERSA	Serratia plymuthica (strain AS9)	367
9	YERE8	Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)	367
10	PECPM	Pectobacterium parmentieri	366

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	4
2	TRYCI	Trypanosoma congolense (strain IL3000)	7
3	VITCO	Vittaforma corneae (strain ATCC 50505)	9
4	ENTBH	Enterocytozoon bieneusi (strain H348)	10
5	TRAHO	Trachipleistophora hominis	10
6	EDHAE	Edhazardia aedis (strain USNM 41457)	11
7	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	12
8	NEMP3	Nematocida parisii (strain ERTm3)	12
9	MEGSC	Megaselia scalaris	13
10	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	14