Related genomes of genome MYCPB based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

MYCPB - Mycoplasma pneumoniae (strain ATCC 15531 / DSM 22911 / NBRC 14401 / NCTC 10119 / FH)

Proteome version: 15-MAY-2014 (Rel. 120, Last updated, Version 5) with 629 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	MYCPN	Mycoplasma pneumoniae (strain ATCC 29342 / M129)	560
2	MYCGE	Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195)	364
3	MYCGA	Mycoplasma gallisepticum (strain R(low / passage 15 / clone 2))	283
4	MYCGH	Mycoplasma gallisepticum (strain R(high / passage 156))	282
5	MYCGF	Mycoplasma gallisepticum (strain F)	280
6	MYCPE	Mycoplasma penetrans (strain HF-2)	242
7	MYCPU	Mycoplasmopsis pulmonis (strain UAB CTIP)	226
8	MYCFJ	Mycoplasmopsis fermentans (strain JER)	222
9	MYCFP	Mycoplasmopsis fermentans (strain ATCC 19989 / NBRC 14854 / NCTC 10117 / PG18)	222
10	MYCHH	Mycoplasma hyorhinis (strain HUB-1)	219

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	3
2	TRYCI	Trypanosoma congolense (strain IL3000)	7
3	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	10
4	VITCO	Vittaforma corneae (strain ATCC 50505)	10
5	ENTBH	Enterocytozoon bieneusi (strain H348)	11
6	NANGC	Nannochloropsis gaditana (strain CCMP526)	11
7	EDHAE	Edhazardia aedis (strain USNM 41457)	13
8	TRAHO	Trachipleistophora hominis	13
9	MEGSC	Megaselia scalaris	13
10	SYMMI	Symbiodinium microadriaticum	14